Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00880 ATGCCAACAACAATGACAAACTCTGAAGAACCCTCTCTTCCCAACCCTAACAATAACACTCAAAACTCCACCAACGGCGATGCGGAACCTCACCACCACCACGATATTGAAGATGAAGAAGAGGAAGATGACGAATACGACGAGGAGGACGACGTCGTTCAGCAACCGAATCGCAGAATTCCCCAATCCGCAGCGTCCAAGCTGCGCGAGCAGCGTTTCAAGGTGGAAACCCTATCGCGGCGGTTGTCGTCGGAGCTGGTTCCGATCCGAGTGCATGACGTGGTCATAAACGGCAACACTAAGACCAAGGATTGGATTATTGAGGCGGAGCTCGGAGGCATAGAGAACGCCACCAGCATGCAGGAGCTCGTGCAATTTTCGCAAATCGCCATTTCCAGGCTACAGGACCTCGAAATCTTCGATTCCTGCACGGTTCGCCTCGAGGCTGGGCCCCGAGAACTTCCTAACACTGCCAATGTCATCGTCGACGTTGTCGAAACCGGTAACAAAGTTTCAGCCAAATTCAGCGTTTATAACAAACCCTCGACTAGTTCTTGGACAGCTGAAGGTGCTCTTACGTATAAGAACTTCTTGGGCTATGGTGATCTATGGGATGCTTCTTTGGCCTATGGTGCCAACCAAGCGACTGAGGTGAGCATCGGGGTGCATGCCCCTCGAGTTAGAAGGTTCTTAACTCCCTTTGTGGCACGGCTATCCATGCTTTCCCAAGATTGGCAAGAGACTTCCTCGTACAAAGACCAGTTAGTGGGTGCGTCTCTTGGGTTGATCTCGACCAAGCACCATGACCTAGCATACACTCTTGGATGGCGTACCTTGGCAGATCCATCACAGATGTCATCCAGGTCTATAAGAAGGCAGCTTGGTCATGGTTTAGTGTCTTCTTTGAAGTATACATTTAAAATTGATAGGAGAAATTCTCCTATCAGGCCAACAAAAGGATATGCTTTTCTTTCCTCCACACATGTTGGTGGCCTCACTCCAGATCCCAGGAGCTTGCGGTTTCTGCGCCAGGAGTTTGATGTTCGCTTTGCTGTCCCTTTTGGGTTTTACAATACAGCACTAAACCTTGGGATATCTGCTGGTGCTGTTTTTCCATGGGGACATGGATTCAAAACCAAGCCATCTCCCCTTCCAGAAAGGTTTTACTTGGGTGGTGATTTTTCTCCAGTTTGCACTCTAGGAGGGCCAACACCCTTATGGGGATTTAGAACTAGAGGATTAGGTCCTACCGAACCTCGTAGGCTAAATAGAGATGAATCCGATGATGACAACGTTGATTCCTCTGGATGGGACTTCATTGGCGGAGATCTTGCTGTTACTGCTTTTGCTGATCTCTCGTTTGATCTTCCAATTAGGTGGTTGAGAGAATATGGAATACATGGTCATGTTTTTGCTGGTTCTGGGAATGCTGCTAAATTAACTCAGAATGAATATAAGCACTTCTCTCCTCGGAAGTTCTTGGAATCTTTTCGAGTGTCAGTTGGATGTGGATTTGTTATTCCTACTGGCCTCTTCCGCCTAGAGGGTAACTACGTTTACATACTCAGAAAGGGTGAGCAAGATCGTGGGAAGACTGGATTTAGGTTTAGTCTGTCAGCTCCTTTATAG 1629 0.4794 MPTTMTNSEEPSLPNPNNNTQNSTNGDAEPHHHHDIEDEEEEDDEYDEEDDVVQQPNRRIPQSAASKLREQRFKVETLSRRLSSELVPIRVHDVVINGNTKTKDWIIEAELGGIENATSMQELVQFSQIAISRLQDLEIFDSCTVRLEAGPRELPNTANVIVDVVETGNKVSAKFSVYNKPSTSSWTAEGALTYKNFLGYGDLWDASLAYGANQATEVSIGVHAPRVRRFLTPFVARLSMLSQDWQETSSYKDQLVGASLGLISTKHHDLAYTLGWRTLADPSQMSSRSIRRQLGHGLVSSLKYTFKIDRRNSPIRPTKGYAFLSSTHVGGLTPDPRSLRFLRQEFDVRFAVPFGFYNTALNLGISAGAVFPWGHGFKTKPSPLPERFYLGGDFSPVCTLGGPTPLWGFRTRGLGPTEPRRLNRDESDDDNVDSSGWDFIGGDLAVTAFADLSFDLPIRWLREYGIHGHVFAGSGNAAKLTQNEYKHFSPRKFLESFRVSVGCGFVIPTGLFRLEGNYVYILRKGEQDRGKTGFRFSLSAPL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00880 542 MobiDBLite consensus disorder prediction 1 26 - -
Vimu1g00880 542 FunFam Outer membrane OMP85 family protein 178 540 - -
Vimu1g00880 542 Pfam Omp85 superfamily domain 196 539 IPR000184 GO:0019867
Vimu1g00880 542 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 35 538 IPR039910 -
Vimu1g00880 542 MobiDBLite consensus disorder prediction 1 70 - -
Vimu1g00880 542 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 179 540 - -
Vimu1g00880 542 Gene3D membrane protein fhac 88 167 - -
Vimu1g00880 542 FunFam Outer membrane OMP85 family protein 88 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00880 Vimu-Chr1 6005962 6009578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00880 K07277 - gmx:100802876 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00880 1 6005962 6009578 Vimu1g00880 1 6005962 6009578 ECH
Vimu6g01700 6 15557413 15562473 Vimu1g00880 1 6005962 6009578 PCT