Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01682 ATGGAACCTTCCAAGAGCATTCTCGACAACCACAAATACTCCTCCATCTTCTTAGCCATCATTTTCCTTCTCTTAACTTCAGCATTGTCTTTAGCAAATGCAAAAATTCATGCGCATGAGTTTGTTGTATATGTTGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACACACAATGCCATCACTGTGAACGGCCAATTCCCCGGCCCAACGTTGGAAATCAACAATGGAGACACTTTAGTCGTCAAAGTCACCAACAAAGCTCGTTACAATGTGACCATTCATTGGCATGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCTGAATTTGTGACTCAGTGCCCCATTCGTCCTGGAGGAAGTTACACATACCGTTTTACCGTTCAAGGACAAGAAGGCACACTTTGGTGGCATGCTCATAGCTCCTGGCTTAGAGCCACTGTTTATGGTGCTTTAATAATTCGTCCCAGGGAAGGAGAACGCTACCCTTTCCCCAAGCCAAACCACGACACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCTATTGATGTGGTGAGGCAGGCCACACGAACTGGAGGAGCTCCTAACGTGTCTAATGCATACACCATTAATGGTCAACCTGGTGATCTTTACAAGTGCTCCACCAAAGATACTACCATTGTTCCGATTCATGCTGGAGAAACAAACCTTCTACGTGTCATCAATGCTGCACTCAGTCAACCTCTCTTTTTTACCGTCGCAAACCATAAACTTACGGTGGTTGGCGCCGACGCCTCCTACCTCAAACCCTTCAGTACCAAAGTCCTCATGTTGGGACCGGGCCAAACCACTGATGTCCTCCTTACCGCCGACCAGGCACCATCTCGCTACTACATTGCGGCGCGTGCATACCAATCTGCTCAAAACGCTCCGTTTGACAACAGCACCACCACCGCAATACTGGAATACAGATCACCTCACCACGGTAACCATTCTCAGCATCATCATTCTAAAGGTGTGAAGAACAAAAGGAGACCTATAATGCCTCCACTCCCTGCTTACAATGACACAAACACCGTCACTGCTTTCAGCAGAAGCTTCAGAAGCCCCAGAAAAGTTGAGGTCCCCACGGAAATCGATCAAAGCCTTTTCTTCGCTGTGGGGTTAGGACTCAACAAATGCCCCAAAAACTTCAAACCAAATAGGTGTCAGGGACCCAATGGGACGAGGTTCACTGCTAGCATCAACAACGTGTCTTTCGTGCTCCCCAACAACGTTTCCATCTTGCAGGCTCAATACCTCGGAATCCCGGGAGTGTTCACGACCGACTTTCCGGGGAAGCCGCCGGTGAAGTTCGATTACACCGGCAACGTGAGCCGTTCATTGTGGCAACCTATTCCCGGGACTAAGGCTCACAAGTTGAAGTTCGGGTCGAGGGTTGAGATTGTTTTGCAGGATACTAGCATTGTTACTCCTGAGAACCACCCTATCCATCTCCATGGCTATGATTTCTACATTGTTGCAGAGGGGTTCGGGAACTTCGACCCCAAGAAAGACAGGGCGAAATTCAACCTTGTTGATCCTCCTTTGAGAAACACAGTGGCTGTCCCTGTAAATGGATGGGCAGTTATTCGATTTGTTGCTGATAATCCAGGTGCATGGCTTATGCATTGTCACTTGGACGTACACATCGGGTGGGGTTTGGCGACGGTGCTGGTGGTGGAGAACGGTGTTGGGAAATTGCAATCCATAGAGCCTCCTCCAGTGGATCTGCCTCTTTGTTAG 1773 0.4879 MEPSKSILDNHKYSSIFLAIIFLLLTSALSLANAKIHAHEFVVYVEATPVKRLCKTHNAITVNGQFPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGERYPFPKPNHDTPILLGEWWDANPIDVVRQATRTGGAPNVSNAYTINGQPGDLYKCSTKDTTIVPIHAGETNLLRVINAALSQPLFFTVANHKLTVVGADASYLKPFSTKVLMLGPGQTTDVLLTADQAPSRYYIAARAYQSAQNAPFDNSTTTAILEYRSPHHGNHSQHHHSKGVKNKRRPIMPPLPAYNDTNTVTAFSRSFRSPRKVEVPTEIDQSLFFAVGLGLNKCPKNFKPNRCQGPNGTRFTASINNVSFVLPNNVSILQAQYLGIPGVFTTDFPGKPPVKFDYTGNVSRSLWQPIPGTKAHKLKFGSRVEIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDRAKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHIGWGLATVLVVENGVGKLQSIEPPPVDLPLC 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01682 590 FunFam Laccase 25 157 - -
Vimu6g01682 590 NCBIfam laccase 34 590 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vimu6g01682 590 CDD CuRO_1_LCC_plant 39 157 IPR034288 GO:0005507
Vimu6g01682 590 SUPERFAMILY Cupredoxins 372 590 IPR008972 -
Vimu6g01682 590 Pfam Multicopper oxidase 440 572 IPR011706 GO:0005507|GO:0016491
Vimu6g01682 590 ProSitePatterns Multicopper oxidases signature 2. 553 564 IPR002355 GO:0005507
Vimu6g01682 590 ProSitePatterns Multicopper oxidases signature 1. 548 568 IPR033138 -
Vimu6g01682 590 CDD CuRO_3_LCC_plant 435 573 IPR034289 GO:0005507
Vimu6g01682 590 MobiDBLite consensus disorder prediction 325 339 - -
Vimu6g01682 590 Gene3D - 41 166 IPR008972 -
Vimu6g01682 590 Gene3D - 169 368 IPR008972 -
Vimu6g01682 590 Pfam Multicopper oxidase 171 320 IPR001117 -
Vimu6g01682 590 FunFam Laccase 169 368 - -
Vimu6g01682 590 Pfam Multicopper oxidase 45 159 IPR011707 GO:0005507
Vimu6g01682 590 PANTHER MULTI-COPPER OXIDASE 38 575 IPR045087 -
Vimu6g01682 590 MobiDBLite consensus disorder prediction 322 341 - -
Vimu6g01682 590 CDD CuRO_2_LCC_plant 173 319 IPR034285 -
Vimu6g01682 590 SUPERFAMILY Cupredoxins 165 366 IPR008972 -
Vimu6g01682 590 Gene3D - 389 590 IPR008972 -
Vimu6g01682 590 SUPERFAMILY Cupredoxins 39 184 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01682 Vimu-Chr6 15431322 15435037 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01682 K05909 - gmx:547704 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01682 6 15431322 15435037 Vimu1g00860 1 5803713 5804723 PCT