Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00860 ATGTATATTCTGTTGATGATTGGCAATGTAGGCACCACTGTTGTTCCAATAGATTCTGGTGAGACCAACCTCCTTCGAGTCATCAATGCTGCACTCAACCAACCACTTTTCTTCAGTGTGGCCAACCACAAACTCACAGTGGTTGGTGCCGATGCCTCCTACCTTAAACCCTTCACCACCTCAGTCATCATGCTGGGTCCAGGCCAAACCACCGATGTTCTCATCCAAGGTGACCAACCACCCTCACGCTACTACATGGCTGCACGTGCCTATCAATCCGCACAAAACGCCCCTTTTGACAACACCACAACCACAGCCATTCTCAACTACAAATCTGCACCATGTCCTGCAAAGGGTATCTCCATCAAACCCCTTATGCCCTCTCTCCCAGCTTACAACGACACCAACACAGTCACTGCCTTCAGTAAAAGCTTGAGAAGCCCCAGACAAGTTGAAGTCCCTGCAGAAATCGATGACGACCTTTTCTTCACCATTGGCCTTGGCCTCAACAATTGCCCTCCAAATTTCAGCCCAAACCAATGCCAGGGTCCAAATGGAACACGCTTCACTGCCAGCATGAACAACGTCTCTTTCGTTCTCCCCAACAACGTCTCCATCTTGCAGGCTCATCACCTTGGAGTCCAAGGAGTGTTCACCACTGACTTCCCTACACAGCCTCCTCTGAAATTTGATTACACTGGTAATGTGAGTCGCTCACTGTGGCAACCCATTCCCGGGACTAAGGTGACCAAGTTGAAGTTTGGATCCAGAGTGCAGATTGTGTTGCAGGACACTAGCATCGTGACCCCTGAGAACCACCCGATCCACCTTCATGGGTATGATTTCTACATAGTAGCAGAAGGGTTCGGAAATTTTGACCCCAAGAAAGACACTTCCAAGTTCAACCTTGTTGATCCACCTATGAGGAACACCGTTGCAGTACCTGTGAATGGATGGGCAGTTATCCGATTTGTTGCCGACAACCCAGGTAAAGTCAATTACTCCAAATAA 1011 0.4886 MYILLMIGNVGTTVVPIDSGETNLLRVINAALNQPLFFSVANHKLTVVGADASYLKPFTTSVIMLGPGQTTDVLIQGDQPPSRYYMAARAYQSAQNAPFDNTTTTAILNYKSAPCPAKGISIKPLMPSLPAYNDTNTVTAFSKSLRSPRQVEVPAEIDDDLFFTIGLGLNNCPPNFSPNQCQGPNGTRFTASMNNVSFVLPNNVSILQAHHLGVQGVFTTDFPTQPPLKFDYTGNVSRSLWQPIPGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDTSKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGKVNYSK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00860 336 Gene3D - 176 334 IPR008972 -
Vimu1g00860 336 Pfam Multicopper oxidase 222 333 IPR011706 GO:0005507|GO:0016491
Vimu1g00860 336 SUPERFAMILY Cupredoxins 152 332 IPR008972 -
Vimu1g00860 336 SUPERFAMILY Cupredoxins 10 148 IPR008972 -
Vimu1g00860 336 PANTHER MULTI-COPPER OXIDASE 15 331 IPR045087 -
Vimu1g00860 336 CDD CuRO_2_LCC_plant 9 110 IPR034285 -
Vimu1g00860 336 Pfam Multicopper oxidase 10 112 IPR001117 -
Vimu1g00860 336 Gene3D - 8 150 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00860 Vimu-Chr1 5803713 5804723 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00860 K05909 - gmx:100797749 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01682 6 15431322 15435037 Vimu1g00860 1 5803713 5804723 PCT