Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01660 ATGGCAGAAACTCGAGACGCCGCTGCCGCCGATGGGGTGCCCGGAACGCCCGCCATAAGGGAAGTCAGACCCGAGGCAGGGAACCATGGCGGAATCGGGTCAGGCGGAATTCGGAGAGTGAATTTCCGAGCGGAGATTGACACGTCACCACCGTTTGGATCGGTTAAAGAAGCCGTGACCCGCTTTGGAGGTAGCGGGCCTTGGATGCCGTTTTTTAACAGCATTGAAGATTTTGACATAAAGAAAGTGGAGGAACAGGCAGCGGAGTTGGAAAAGGATTTGATTGTCAAAGAACTTGAGACTCTTGATGTGCTTGAAGAACTGGGAGCTACTAAGAGGATTGTGGAGGACTTGAAGCAGCAACTGCAAAAAGAGGCTATGAAATGTTTTGCATCACGAGATGTAAGTTCATATGAACAAGTTGGAACTCCTGTTATCAAGGAGATGGATAAGGAAAACTGTGGAAACAATGTCAATGATCAAGAACAGATGATGCAAATTCCAAGCCCGTGCTCTATCATGTCATCATCACCTGATATGATCTTAATGGAATTGAAGCAAGCCAAGTTGAATTTATGCAAAACTATAAATGAACTTGGGGTGATACAGTCCTCTGTTGAGTCTTTGAACAAGAAGATGAAGAAAGAGAAATATTTTTTGGAGAGGACACGAGAAAAGCTAGCATCGAAGTTTGCAGCAGTATCTGCTCTAGAGAGGGTCCAAGAGCAGACAAAATTAAATCCTCCAGCATCTCATGTAGAATGTGCGTCAGGTAACCCTGCTAATACTGTAAGAAATTTGAATTCTGATTCCGGGCAGTGCAATAGAATGGTTGAGACTAGAAGATCTGAACCTTCAAAGCCCTTAAGTGTGTATGAAGAATATGGATTCAGTGTTAAGACTGCTGAGATGAGGTGGCTCGCTGCTAAAAAGATGGAAGAAGCTGCAAGGGCAGCAGAATCCGTTGCTCTTGCTGAAATCAAGGCTCTATCTAATGCTGAAAGATCTTCAGGATTTGTTCTGCCAGAGCCTGAGAAAGTCAGTTTTTCTTTTGGAGATCGCTCTCCCCTAAACTCCAAGGCTCATATACCAGAGGAGTCAACTTTGAAGAAGGTAATAGATGCAAAGTTTCAAATTGATGAAACAAAAATTTCTAAACTGACTATTTTGAAGAAGTTGGAGGAAGCAACGGAGGAAGTTCTACACAGCAAACAAGTCTTGACAGATGCTTTAAACAGAGTTGAAAGTGCAAACCAAAAGCAATATGCTGCTGAGGAGGCTCTAAGGAGATGGATTCCAGAGGATGATCTCAGGAGGTATAACACTATTTATTGTAACAAGCTTAATCAAGGTGGAATCTGTAAAGATTCTCTGAATGATGTAACCAGGTCAACAACAGCAAACAATGGTCCAAAGCCAACATTAAGACCCACAATTTCTATGAGAGATGTACTTAGCAGAAAGCAGGTTCCTGAAGGATATGCTACAAGAAAGGAGATGGAAGAGCACACTGAAAGACAAAAGGTGGCGTTGAGTCAAATGCTTCAAGCATTGAGGGAAGATCTAACTCTTCCAACAAAGACTGAGAAAGATGGGACCAATCAGAAGCAGTTCATGCCACCAAGGAAGAAATTTGGATTCATTCAAATATCACTCCCCCCATTGACAAAACCAAGCAAGAAAAGGGCATAA 1692 0.4297 MAETRDAAAADGVPGTPAIREVRPEAGNHGGIGSGGIRRVNFRAEIDTSPPFGSVKEAVTRFGGSGPWMPFFNSIEDFDIKKVEEQAAELEKDLIVKELETLDVLEELGATKRIVEDLKQQLQKEAMKCFASRDVSSYEQVGTPVIKEMDKENCGNNVNDQEQMMQIPSPCSIMSSSPDMILMELKQAKLNLCKTINELGVIQSSVESLNKKMKKEKYFLERTREKLASKFAAVSALERVQEQTKLNPPASHVECASGNPANTVRNLNSDSGQCNRMVETRRSEPSKPLSVYEEYGFSVKTAEMRWLAAKKMEEAARAAESVALAEIKALSNAERSSGFVLPEPEKVSFSFGDRSPLNSKAHIPEESTLKKVIDAKFQIDETKISKLTILKKLEEATEEVLHSKQVLTDALNRVESANQKQYAAEEALRRWIPEDDLRRYNTIYCNKLNQGGICKDSLNDVTRSTTANNGPKPTLRPTISMRDVLSRKQVPEGYATRKEMEEHTERQKVALSQMLQALREDLTLPTKTEKDGTNQKQFMPPRKKFGFIQISLPPLTKPSKKRA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01660 563 Coils Coil 105 125 - -
Vimu6g01660 563 Coils Coil 501 521 - -
Vimu6g01660 563 MobiDBLite consensus disorder prediction 521 544 - -
Vimu6g01660 563 Pfam Weak chloroplast movement under blue light 44 129 IPR008545 -
Vimu6g01660 563 Pfam Weak chloroplast movement under blue light 182 435 IPR008545 -
Vimu6g01660 563 Coils Coil 80 100 - -
Vimu6g01660 563 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g01660 563 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 44 133 - -
Vimu6g01660 563 MobiDBLite consensus disorder prediction 244 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01660 Vimu-Chr6 15289552 15292251 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01660 - - gmx:100776514 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01660 6 15289552 15292251 Vimu1g00832 1 5598260 5600290 ECH
Vimu6g01660 6 15289552 15292251 Vimu6g01660 6 15289552 15292251 ECH
Vimu6g01660 6 15289552 15292251 Vimu1g00832 1 5598260 5600290 PCT