Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00832 ATGGGTAACCAAAAAAGCTCAAAGCTCGAACCTTTATGTGGCTTTAGTTATCGATGCTTCTCTGAAACCCGCGTTTGCTTTGAGCTTTGTGCCAATGACCGACACCCGGAAACTTGCCGCAGCCGGTTTCCCGGCGACTTCGAGGGTGAAACCCGAGCCTGGTGTTGTACCCGGGTCAGGTTTGGTTTGAGAGCTGAAATTGATACTTCGCCGCCGTTTGCGTCTGTCAAGGAAGCAGTGACCCGTTTCGAAGGAACCGGGCCGTGGACACCCTTTTGCAAATTCGGAGAGGCTCGTAACAGTGCTGAAGACTTTGACATAAAGAGAGTGGAGGAAGAAGCAGCAAAGTTAGAAAAGGATTTGATAGTGAAAGAACTCGAAACACTTGATGTGCTTGAAGAACTGGGAGCTACCAAAGCAATTTTGGAGGAATTGAAGCTGCAGCTACAATCAGAAGCATTGAATTGTTTTGCAACTCGAGGTGAAAATTCATGTGAACAGGCTGGAGCTGCTACTAGAAATTGTGTGAATGGTATCAACTATGAAGAGCAGACATTGCAATGTTCGGCTCAGTGTTCACCTTTACCTGATCTGTTCTTAGTGGAGTTAAGACAAGCTAAAGTAAGTCTTGGTAAAACTATTAATGATCTTGGAGTAATACAATCCTCTGTTGAAGATTTAAATAAGAAAATGAAGAATGAAAGGCTCTTTGTTGAGAGGGCACGAGAGAAGCTGGCATCGAAGTTTGCAGCTGTCTCTACTCATGAAGTAACCAAAACAGAAGCAGGGTTTAATCCTCCTGAAGCTACTGTAGAAACAGCTTGCACGTGTCACCATCCCCTTAATGGTGGGAGGAGTTTTGGATTTGATACTGGACAGTGCAATGGAATGAATGAAACAAGAAGCTCTGAAGTTTTAAGGCCCTTGCCTGAGTTTGGTGAGAATGGATTTAGTGTTAAGACTGCTGAGATGAGGTGGCTTGCAGCTAAAAAGATGGAAGAAGCTGCAATGGCGGCAGAAGCCGTTGCTCTTGCTGAAATTGAGGCTCTTTGTTGCCATGAGATATCAACTGAATTTTCTTTTCCAGAACATCAGAAAGTGACTTTTGCCTTAGGGGAGTGCTCTCCTCTAAATCCCGTAGTTCAGTTTCCTCAAGAGTCAACCTTGGAGAAGGTAACAGATTCCAAGTTCCAAATTGACAAAATAGGCATTTCTAAACTGGGTATTTTGAAAAAGTTTGAGGAAGCAACAGAGGAAGTTCTACGCAGCAAACAAGTCTTGACTGAGGCATTGAATAGTGTTGAAAGTGCAAACATAAAGCAGCTTGCTGCTGAAGAGGCTCTTCGGAGATGGATTCCTGAGAATGATCTAAAAGGGCAGACATTGACTGAGAGCAGCCTGTTCAATCAAGCTGGAATTTGTCAAGATTCTCCTCTACCAGATGCAATCCGATCAATTACAAATAACAATGATCCGAAGCATGCCTTAAGGTCTTCAGTTTCAATGAGAGATGTACTTAACAAAAAGCCAGTTCTTGAAGATTGTACTACAACAAAGGATATGCAAGAGCATTCTGGAAAGACAGTAGCCTTGAGTCAAATGCTTCGAGCATTGAAGGAGGATCAAACTCTGCCGACAATACCCGAGAAAGATGTGAAGAGTAATCAAAAGCAAAAGCAGTTCATAGCATCTAGGAAAAAGTTCAGTTTCATCCAAATATCACTCCCCTTGGGAAAGCGAAGTAAGAAGAAGACATGA 1758 0.4317 MGNQKSSKLEPLCGFSYRCFSETRVCFELCANDRHPETCRSRFPGDFEGETRAWCCTRVRFGLRAEIDTSPPFASVKEAVTRFEGTGPWTPFCKFGEARNSAEDFDIKRVEEEAAKLEKDLIVKELETLDVLEELGATKAILEELKLQLQSEALNCFATRGENSCEQAGAATRNCVNGINYEEQTLQCSAQCSPLPDLFLVELRQAKVSLGKTINDLGVIQSSVEDLNKKMKNERLFVERAREKLASKFAAVSTHEVTKTEAGFNPPEATVETACTCHHPLNGGRSFGFDTGQCNGMNETRSSEVLRPLPEFGENGFSVKTAEMRWLAAKKMEEAAMAAEAVALAEIEALCCHEISTEFSFPEHQKVTFALGECSPLNPVVQFPQESTLEKVTDSKFQIDKIGISKLGILKKFEEATEEVLRSKQVLTEALNSVESANIKQLAAEEALRRWIPENDLKGQTLTESSLFNQAGICQDSPLPDAIRSITNNNDPKHALRSSVSMRDVLNKKPVLEDCTTTKDMQEHSGKTVALSQMLRALKEDQTLPTIPEKDVKSNQKQKQFIASRKKFSFIQISLPLGKRSKKKT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00832 585 Coils Coil 132 152 - -
Vimu1g00832 585 Pfam Weak chloroplast movement under blue light 65 182 IPR008545 -
Vimu1g00832 585 Pfam Weak chloroplast movement under blue light 311 455 IPR008545 -
Vimu1g00832 585 Coils Coil 100 127 - -
Vimu1g00832 585 Coils Coil 224 244 - -
Vimu1g00832 585 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 200 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00832 Vimu-Chr1 5598260 5600290 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00832 - - gmx:100781281 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01660 6 15289552 15292251 Vimu1g00832 1 5598260 5600290 ECH
Vimu1g00832 1 5598260 5600290 Vimu1g00832 1 5598260 5600290 ECH
Vimu6g01660 6 15289552 15292251 Vimu1g00832 1 5598260 5600290 PCT