Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01637 ATGGCTAATGCCCTTCATAACGCTGCCATGGCTTTTGGTTTTCCATCCCTATCCACTCTTAGAACCATGCATAAAGATAAACATATTGAGCTGAAAAGAATGGCTGTGGCGATTAAGGCAAAGTCTAATAGCGATTTTGATGACTCGGGCGTTGATATTTCTTTGAGTCACAGAGTTGATGCAGTGAAGCCTTCCAAAACTCTAGCCATATGTGATCACGCCACTGCTCTTTCACAATCTGGAGTTCCTGTTATTCGCTTATTTTTTGGAGAGTCTGATTTTGACACTCCTGCTGTAATAGCCGAGGCTGGAATGAACGCAATTCGTGACGGTTATACCAGATATACCCCCAATGCTGGCACGTTAGAATTGCGCCAAGCAATATGTCACAAGCTAAAAGAGGAGAATGGAATTATACATTCTCCTGATCAGATTGTGGTCAGTAATGGAGCCAAGCAAAGTATTGTTCAAGCAGTGCTTGCAGTTTGTTCCCCAGGAGACGAGGTTATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCACGACTGGCTCATGCAACACCTGTGATTCTTCCAACCCACATACTGAATGATTTTCTTTTGGACCCCAAACTGCTAGAAGACAACCTTACAGAAAGATCCAGATTGCTTATTCTTTGTTCACCATGTAACCCAACAGGGTCTGTCTATCCTAAGAAATTACTCGAAGAGATAGCCCAAATTGTAGCAAAGCACCCCAGGCTACTGGTTCTTTCTGATGAAAATTATGAACACATAATTTATGCACCGGCAACTCATACAAGCTTTGCATCTTTACCTGGAATGCGGGACAGAACTCTAACTGTTAATGGACTTTCCAAGACATTTGCAATGACTGGTTGGCGGCTTGGGTATATTGCTGGTCCAAAACATTTTGTTGCGGCATGTGGAAAGATTCAAAGCCAGTTTACTTCAGGAGCAAGTAGTATATCTCAGAAAGCTGCAGTTGCCGCATTAGGATTAGGCTATGCAGGAGGAGAAGCTGTTTCTACCATGGTAAAAGCTTTCAGGGAAAGAAGGGATTTCTTGATTGAAAGCTTTAGAGACATTGATGGAGCGAGAATATGTGAACCACAGGGTGGATTCTATGTATTCATTGATTTGAGCTCTTATTATGGAAGAGAAGCTGAAGGGTTCGGTTTAATCGAAAATTCTGACTCTCTCTGTCGCTATCTGCTGGAAAAGGGCCAGTTGGTGAAGTTGAAGTGTACATATTTGACCAACGCAAACAAAAAGCTGGTAGAAGTAGTAGAGGAAGATGTGAAGGAAAAGAGAAGTTACCCTTAG 1332 0.4242 MANALHNAAMAFGFPSLSTLRTMHKDKHIELKRMAVAIKAKSNSDFDDSGVDISLSHRVDAVKPSKTLAICDHATALSQSGVPVIRLFFGESDFDTPAVIAEAGMNAIRDGYTRYTPNAGTLELRQAICHKLKEENGIIHSPDQIVVSNGAKQSIVQAVLAVCSPGDEVIIPAPFYVSYPEMARLAHATPVILPTHILNDFLLDPKLLEDNLTERSRLLILCSPCNPTGSVYPKKLLEEIAQIVAKHPRLLVLSDENYEHIIYAPATHTSFASLPGMRDRTLTVNGLSKTFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLIESFRDIDGARICEPQGGFYVFIDLSSYYGREAEGFGLIENSDSLCRYLLEKGQLVKLKCTYLTNANKKLVEVVEEDVKEKRSYP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01637 443 Gene3D - 114 336 IPR015421 GO:0003824
Vimu6g01637 443 FunFam Aspartate aminotransferase 114 336 - -
Vimu6g01637 443 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 286 299 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vimu6g01637 443 Pfam Aminotransferase class I and II 84 421 IPR004839 GO:0009058|GO:0030170
Vimu6g01637 443 SUPERFAMILY PLP-dependent transferases 55 414 IPR015424 -
Vimu6g01637 443 PANTHER ASPARTATE AMINOTRANSFERASE 53 413 - -
Vimu6g01637 443 CDD AAT_like 85 420 - -
Vimu6g01637 443 Gene3D Aspartate Aminotransferase, domain 1 68 413 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01637 Vimu-Chr6 15102922 15111406 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01637 K15849 - gmx:100780254 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01637 6 15102922 15111406 Vimu6g01637 6 15102922 15111406 ECH
Vimu11g04056 11 62353672 62357917 Vimu6g01637 6 15102922 15111406 PCT