Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04056 ATGGCCAACACTCTACATAACGGTGCCAAATGCAGAATCCCTTTGCGGAACCAATCCCTGTCGATCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTTCCCAAAACACGTGTCGGAAAACAATCAAACACCTTCTCTGTCAAGGCTTCGCAAGCTGACTTCCCCGTTGACCCTTCCATCAGTCCACGTGTCAATGCCGTCAAGCCTTCCAAAACAGTCGCCATCAGCGACCTCGCCACCTCCCTCGTCCAAGCCGGCGTTCCCGTCATTCGACTCGCCGCCGGCGAGCCTGATTTCGACACGCCCGCTCCCATCGCCGAGGCTGGGATCAATGCAATTCGGGAAGGTTACACGAGGTACACGCCCAATGCCGGAACCATGGAACTGCGTCAAGCAATTTGTCATAAGCTAAAAGAGGAGAATGGTATTACTTATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAACAGAGTCTTGCTCAGGCAGTGCTTGCAGTTTGCTCCCCTGGAGATGAGGTCATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACATCAATATCTGATAATTTCCTCTTAGATCCCAAACTTCTTGAATCCAAAATAACTGAAAGATCGAGACTGCTCATTCTTTGCTCGCCATCTAACCCAACTGGATCTGTCTACCCTAAGGGATTACTTGAAAAGATAGCCCAGATTGTTGCAAAGTACCCTAGGCTTCTGGTTCTCTCGGATGAAATTTATGAACACATAATTTATGCCCCAACAACTCACACTAGCTTTGCATCTTTACCGGGAATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGGCCTTTGCAATGACGGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCTGCATGTGGAAAGATCCAAAGTCAGCCTACAATACATCAAACGGATACTCAGTTCACTTCAGGGGCCAGTAGTATTGCCCAGAAAGCTGCAGTTGCTGCGTTAGGACTAGGTTATGCTGGTGGGGAAGCAGTTTCTACCATGGTTAAAGCATTTAGGGAGCGAAGGGATTTCTTGGTAAAAAGTTTTAGAGAAATAGATGGTGTCAAGATATCCGAACCCCAGGGAGCATTCTATTTATTCATTGATTTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGAGGATTCTGAGTCCCTCTGTCGATACTTACTGGATGTTGGCCAGGTAGCCTTGGTTCCAGGGAGTGCATTTGGAGATGATACTTGCATCCGCATCTCTTATGCAGAATCCCTTACTACCCTACAGGCAGCTGTAGAAAGAATTAAGAAGGCACTCATCCCTCTAAGCTCTGCTGCACTTGTTTAA 1419 0.4679 MANTLHNGAKCRIPLRNQSLSISRHVSRSLSFLPKTRVGKQSNTFSVKASQADFPVDPSISPRVNAVKPSKTVAISDLATSLVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICHKLKEENGITYTPDQVVVSNGAKQSLAQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKGLLEKIAQIVAKYPRLLVLSDEIYEHIIYAPTTHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQPTIHQTDTQFTSGASSIAQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVKSFREIDGVKISEPQGAFYLFIDFSFYYGREAEGFGKIEDSESLCRYLLDVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALIPLSSAALV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04056 472 PANTHER ASPARTATE AMINOTRANSFERASE 59 463 - -
Vimu11g04056 472 SUPERFAMILY PLP-dependent transferases 60 463 IPR015424 -
Vimu11g04056 472 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 291 304 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vimu11g04056 472 Gene3D - 119 350 IPR015421 GO:0003824
Vimu11g04056 472 FunFam Aspartate aminotransferase 119 350 - -
Vimu11g04056 472 CDD AAT_like 90 461 - -
Vimu11g04056 472 Gene3D Aspartate Aminotransferase, domain 1 73 457 IPR015422 GO:0003824
Vimu11g04056 472 Pfam Aminotransferase class I and II 88 459 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04056 Vimu-Chr11 62353672 62357917 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04056 K15849 - gmx:100776446 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04056 11 62353672 62357917 Vimu11g04056 11 62353672 62357917 ECH
Vimu11g04056 11 62353672 62357917 Vimu6g01637 6 15102922 15111406 PCT