Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01606 ATGGGGAGAGGAAAAGGAGGGAAGAAGAGTCGCACTCAAAGAAAGCATTTCCAAGAGAGCAGAGAAAATGTATGGAACTCCAAACGTCCTAGATCAGATTCAGATCCTATTCCTTTCTCCAACCCTTTCGCTACTCAGAACCTCGCTTTCGATCACTATTACAAGGCTGAGCGCCAGGTTATAGCAAATGATCTAGATATCCAAAGATGCAATCTGCTCATTCACCAAACCAAACGGATGTGCACAGCCAACCTGATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTCTTAGAAAAACATTATGATAAAATGGAGCTAGATCAAGAAGCCCAGTTATTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGTGGAGATGGCACCCTTCGTAAGGCCCCTGATCTGTGGAGGAAATGGTATGTGACAAAGGCAAGTGGTTCATCTCCAGCAAAGATGTTCCCAAGTTTCGTAGAAATGTAG 489 0.4417 MGRGKGGKKSRTQRKHFQESRENVWNSKRPRSDSDPIPFSNPFATQNLAFDHYYKAERQVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLEKHYDKMELDQEAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWYVTKASGSSPAKMFPSFVEM 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01606 162 Pfam 16S rRNA methyltransferase RsmB/F 55 141 IPR001678 GO:0008168
Vimu6g01606 162 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 1 162 IPR001678 GO:0008168
Vimu6g01606 162 MobiDBLite consensus disorder prediction 13 29 - -
Vimu6g01606 162 MobiDBLite consensus disorder prediction 1 38 - -
Vimu6g01606 162 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 146 IPR029063 -
Vimu6g01606 162 ProSitePatterns NOL1/NOP2/sun family signature. 117 128 IPR018314 GO:0003723|GO:0008168
Vimu6g01606 162 Gene3D Vaccinia Virus protein VP39 44 154 IPR029063 -
Vimu6g01606 162 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 59 148 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01606 Vimu-Chr6 14847878 14853678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01606 K15334 - vum:124825440 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03994 11 61812152 61821928 Vimu6g01606 6 14847878 14853678 PCT