Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03994 ATGGGGGGTGGTGGGAGAGGAGGCAGGTCCCGCACTCAAAGAAAGCATTTCCGCCAGAGCAGAGAGAACGTGTGGAAGCGTTCCAAATCTGATCCTGATCCTTCTTCCACACAAAACAATCCTTCGTGGACTCCTTTCGCCACCGAGAACGCGGCTTTCGATTTCTACTACAAAGAGCAGGGAATAGTCGACCCGCAACAGTGGGACCAATTCGTTGCTGTTCTCCGAACTCCATTGCCTGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAACTGGAGAATGATTTCGTGCATTCTCTTCGTGACGAGGTTGGTGAAGGGGGTGAGACTGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAATTTTGCTTGGCATTCAAATTTTTCTAGGATGCAGCTTAGGAAGAATCAAACGCTTGAGAGACAGAATTGGTATTCCATGGCTGTATCTGTTCCTGATCATATTAAATGGTTCCATGAATTTTTAAAGCTAGAAAACGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCTCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAAGTAAATCAAGATCACTGCCTGATGGAATGGTTATAGCAAATGATCTCGATGTCCAAAGATGCAATCTTCTCATCCACCAAACAAAAAGAATGTGCACGGCCAATCTAATTGTTACAAATCATGAAGCACAAAACTTCCCTGGATGCCGATTAAACAGAAATTATGAAAGGATCGAGTTAGATCACAATATTGGTCAACTATTATTTGATCGTGTTCTTTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGCAAGGCACCTGATCTTTGGAGAAAATGGAACACAGGGATGGGACATGGCCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGAAGTGAACGCCCTGTCTTGGGCCTTAGGGATCAGACTAGTATATCTTTACTCAAAATTGGTGGAAGAATGGTTTATTCAACTTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCAAAGGTGTGGAGGTTCTGTTGAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAAATGGAAGGTATATGACAAGGGCTCCTGGTTTGTCTCTTATAATGGTGTTCCTAAGTTTCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGAAGAGGACATCCCGATGTTGTTGATAGTAGCTGTAATGTTAACGTAGAGGTTGGTACTAATGGTATTAATGAAAACGTTGGAGATATTAATGAAAACGCAGGAGATGGTGTTCAACCAGTACTGAATTCTGTGATGTCTGAATCTGCCGAGGAAGTTTCTGATTTCCCTCTAGAGCATTGTATGAGGATAGTGCCTCATGATCAGAATACTGGAGCCTTCTTCATTGCTGTTCTGCAAAAAGTTTCTCCTTTGCCAGTAATTCCAGAAAAACAAAAAGTAAAAATTGATGAGCAATATGTAGATCCAGCAAACCAGAGTATTAATGATCGGCAAGTACAACAGATCACTTCACCGGAAAATGCACATGAAGAAGACTTCAAAGCAGTTTCAGAGGAAAATGCAGATGACAACGAACCCAATAACCAAGATATGGAAGATGATCCTGTTGCATGTGAAGAACAGAAAACTAAGGAAACTCTAGAGCCTGATAATGTACAAAACACGATGAAGAGGGTTCCAGGCAAGAGAAAGCTACAAATTCAAGGAAAATGGAGGGGTGTTGACCCCGTTGTCTTTTTCAAAGATGAAACAATAATCAATAGTATAAGGGGTTTTTATGGAATTGACGAGCGTTTTCCATTCAATGGTCACCTTGTTACAAGAAATAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCGAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTAGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTAGTTCTGCACCATGTGCTTTCCGGATATCGTCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCTGCAGACTTCAAGCATCTTCTGATGAACAAAGAAGTAAAATTTGAAGATTTTACTGATGCCAAGTTTGGTGAAAAGGCAGCAAACCTATTGCCCGGCTGCTGTGTGGTAATTCTGAGTTTAGGAGACACAGCTGCTGTAGAGTCTTTCCAAGTGGATGAATCAACGATAGCCATTGGATGCTGGAAAGGAAGAGCGAGGTTGTCTGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGTTTTGACAATGTAAATGGTTCCTCTGGGCATGTCCACAAATCCTCTAATGATGAGGAAGAAATACAACCTGTGCAAGAGTAA 2550 0.4192 MGGGGRGGRSRTQRKHFRQSRENVWKRSKSDPDPSSTQNNPSWTPFATENAAFDFYYKEQGIVDPQQWDQFVAVLRTPLPATFRINSSSQFSDDIRSQLENDFVHSLRDEVGEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERQNWYSMAVSVPDHIKWFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKSRSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLNRNYERIELDHNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGSERPVLGLRDQTSISLLKIGGRMVYSTCSMNPIENEAVVAEVLQRCGGSVELVDVSSELPQLIRRPGLKKWKVYDKGSWFVSYNGVPKFRRSVILSSMFPSGRGHPDVVDSSCNVNVEVGTNGINENVGDINENAGDGVQPVLNSVMSESAEEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPVIPEKQKVKIDEQYVDPANQSINDRQVQQITSPENAHEEDFKAVSEENADDNEPNNQDMEDDPVACEEQKTKETLEPDNVQNTMKRVPGKRKLQIQGKWRGVDPVVFFKDETIINSIRGFYGIDERFPFNGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSAPCAFRISSEGLPLILPYITKQILHASPADFKHLLMNKEVKFEDFTDAKFGEKAANLLPGCCVVILSLGDTAAVESFQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDNVNGSSGHVHKSSNDEEEIQPVQE 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03994 849 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 48 419 - -
Vimu11g03994 849 PRINTS RNA (C5-cytosine) methyltransferase signature 355 371 IPR023267 GO:0001510
Vimu11g03994 849 PRINTS RNA (C5-cytosine) methyltransferase signature 500 517 IPR023267 GO:0001510
Vimu11g03994 849 PRINTS RNA (C5-cytosine) methyltransferase signature 292 304 IPR023267 GO:0001510
Vimu11g03994 849 PRINTS RNA (C5-cytosine) methyltransferase signature 202 212 IPR023267 GO:0001510
Vimu11g03994 849 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 55 518 IPR029063 -
Vimu11g03994 849 MobiDBLite consensus disorder prediction 538 556 - -
Vimu11g03994 849 Gene3D Vaccinia Virus protein VP39 50 417 IPR029063 -
Vimu11g03994 849 MobiDBLite consensus disorder prediction 538 586 - -
Vimu11g03994 849 MobiDBLite consensus disorder prediction 30 45 - -
Vimu11g03994 849 MobiDBLite consensus disorder prediction 1 45 - -
Vimu11g03994 849 Pfam 16S rRNA methyltransferase RsmB/F 192 389 IPR001678 GO:0008168
Vimu11g03994 849 MobiDBLite consensus disorder prediction 557 571 - -
Vimu11g03994 849 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Vimu11g03994 849 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 389 408 IPR023270 GO:0016428
Vimu11g03994 849 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 689 701 IPR023270 GO:0016428
Vimu11g03994 849 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 13 830 IPR023267 GO:0001510
Vimu11g03994 849 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 518 IPR001678 GO:0008168
Vimu11g03994 849 ProSitePatterns NOL1/NOP2/sun family signature. 291 302 IPR018314 GO:0003723|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03994 Vimu-Chr11 61812152 61821928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03994 K15334 - gmx:100808859 1440.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03994 11 61812152 61821928 Vimu11g03994 11 61812152 61821928 ECH
Vimu11g03994 11 61812152 61821928 Vimu6g01606 6 14847878 14853678 PCT