Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01582 ATGCAGGCTCCTAGGCTCCTGTTCAATATAAGCTTTGAGGCGATAGCCATTGCAGGTTATTGTCGTGATAGTAGGCCAATAGAGGCGTTTTCTGAAGCCAGTGGTTGGAATCTGAAAAACTCGAAATGGTTATGTGATGAAGCTAGCATTCCACCAAGAGGTTGGAACTCCTATGATTCCTTTTCCTGGACAATATCTGAAGAAGAATTCTTGCAGAGTGCTGAAGTAGTTTCTCAGCGTCTCCATGATCATGGATATGAGTATGTTGTGGTGGATTACCTCTGGTATAGAAGGAAAGTTGAGGGTGCTTATCATGATTCTCTTGGATTTGATGTGATTGATGAATGGGGGAGGATGCTTCCTGATCCAGGAAGGTGGCCTTCTTCTGAAAATGGGAAAGGATTTTCTGAAGTAGCTAATCGAGTACATGGCATGGGTTTGAAATTTGGGATTCATGTCATGAGAGGGATAAGTACACAAGCTGTAAACGCAAACACCCCTATCCTTGATACAAAAACGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTGAATACAAAGTTGGGAGCAGGAAAAGCTTTTCTGAGATCCCTTTATGAGCAGTATGCTTCATGGGATGTTGATTTTGTGAAACATGACTGTGTATTCGGGGATGACTTTGATTTAAATGAAATAACCTATGTTTCTGAGGTATTCTGGAGTTCTCCTGTTCTCAAGCAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACTAGTGTGACACCAGCTATGGCCAAGGATGTCAGTAGACTGGTCAATATGTATCGTGTAACAGGAGATGACTGGGATACATGGGGGGATGTCAAATCACATTTTGATATTGCCAGGGATTTCTCAAATGCTAGTATGATAGGAGCAGGAGGTTTAACGGGGAAATCTTGGCCTGATTTGGATATGCTACCCTTTGGATGGCTAACTGATCCTGCAAATAACTTTTATGTGAAACCAGAATCCGGTGGCATTGTAAGCATTTGTATGCATATAGATTTACTCTTCTATGAAGAGGACATTGCTGGTTCAAATGAAGGTCCACATAGGTTTAGTCGTCTCAATCTGGAAGAAAAGAAGACACAGATGACTCTTTGGTCTATGGCAAAGTCTCCCCTTATGTATGGTGGGGATGTTCGGAAGATAGATCCTAGTACATTTGATATTATCACAAATCCCACCCTTCTCGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCCTTATATCACAATTGTGAATAGTGAAGATCAGGATCTTAGTTTGAGAAGAAGTGGCAAAGAAATAAAAACAACTTTCACCCATTCATTAGGCCTCACAAAGTGCACCGAGTCAAAGGCAATAGGTTGGGCTAGTGAAAGGCTTAACCTATATCTTGAAAGAATATGTTGGAAAAGGAGTTTAGGAAACAAGCATCTTGCCCCCTTCTGTGTGCACAAAAAAGAACTCTACTTCCCATTAGATGAAGTGAGTATGTATCAGGAGTATCATCATGGGAAACATCATTTAGTTGCAACAAACAGATTAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAGCTCACCTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGGTGGGATTCAAATCAGATGTGGGAATTGAATCCTAATGGGACCCTGGTCAATAGTTATTCTGGCTTGTGTGCAACAGTAGAGTCTAGCGAAGGTGAAAATATACTACTAATTCTGGTGGCTTGCGCTCTTGGATTGCTACAGGAAGAAAAGACACTGGTTGAGGTTGAACTAGTAGCATGTCACATTAAAGAATTCATTGGAGCATCTGACCTGGCTAAGTTTCTTCCTACCAGAGACTTCAAAGACTTCAGTTCTTGTGAGGGCAGTGAAGTGTGGAGTGGAAATGCTGTAGAAATAACACAAGGGAGGCTATCAACAGCAGTGGAAATGCATGGAAGTGCAATAATTGTTCTGAAATGCAGCTAA 2073 0.4149 MQAPRLLFNISFEAIAIAGYCRDSRPIEAFSEASGWNLKNSKWLCDEASIPPRGWNSYDSFSWTISEEEFLQSAEVVSQRLHDHGYEYVVVDYLWYRRKVEGAYHDSLGFDVIDEWGRMLPDPGRWPSSENGKGFSEVANRVHGMGLKFGIHVMRGISTQAVNANTPILDTKTGGAYQESGRVWYAKDIAIPERACAWMPHGFMSVNTKLGAGKAFLRSLYEQYASWDVDFVKHDCVFGDDFDLNEITYVSEVFWSSPVLKQFDRPIVYSLSPGTSVTPAMAKDVSRLVNMYRVTGDDWDTWGDVKSHFDIARDFSNASMIGAGGLTGKSWPDLDMLPFGWLTDPANNFYVKPESGGIVSICMHIDLLFYEEDIAGSNEGPHRFSRLNLEEKKTQMTLWSMAKSPLMYGGDVRKIDPSTFDIITNPTLLEINSFSSNNMEFPYITIVNSEDQDLSLRRSGKEIKTTFTHSLGLTKCTESKAIGWASERLNLYLERICWKRSLGNKHLAPFCVHKKELYFPLDEVSMYQEYHHGKHHLVATNRLKFCLDASPKRKLTSKEFKRGTFSPCRWDSNQMWELNPNGTLVNSYSGLCATVESSEGENILLILVACALGLLQEEKTLVEVELVACHIKEFIGASDLAKFLPTRDFKDFSSCEGSEVWSGNAVEITQGRLSTAVEMHGSAIIVLKCS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01582 690 Gene3D Aldolase class I 34 434 IPR013785 -
Vimu6g01582 690 Gene3D - 521 617 - -
Vimu6g01582 690 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 48 689 IPR002241 GO:0004553|GO:0005975
Vimu6g01582 690 ProSiteProfiles Lectin domain of ricin B chain profile. 546 610 - -
Vimu6g01582 690 Pfam Alpha galactosidase A 64 159 IPR002241 GO:0004553|GO:0005975
Vimu6g01582 690 CDD GH27 51 432 IPR002241 GO:0004553|GO:0005975
Vimu6g01582 690 CDD RICIN 528 616 IPR000772 -
Vimu6g01582 690 SUPERFAMILY Ricin B-like lectins 535 612 IPR035992 -
Vimu6g01582 690 SUPERFAMILY (Trans)glycosidases 49 432 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01582 Vimu-Chr6 14678583 14684280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01582 48 516 Glycoside Hydrolase AT3G26380 64.407 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01582 - - gmx:100777954 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03962 11 61485459 61492173 Vimu6g01582 6 14678583 14684280 PCT