Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03962 ATGATTGTGCATCATGCATATGTGCTTGCAGTGATGAAGTGCTTCTCTCTGTGCTTAGTCTCCTTTTGGGTTCTCCTTCCTCTCTGTTTGCCAAGTGTGTCATCCCAAAATATACCTGAGAGTGGCAAACAGCAAGCTAGCCTCCCACCAAGAGGTTGGAATTCTTATGATTCCTTTTGCTGGACAATTTCTGAAGATGAATTCTTACAAAGTGCTGAAATAGTTTCTGAACGTCTCAAGGCTCATGGATATGAGTTTGTCGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAAGGTGCCTATCCCGATTCCCTTGGATTTGACGTGATTGATGAATGGGGAAGGATGCTCCCAGACCCCGGAAGGTGGCCTTCTTCCACAGGTGGGAAGGGTTTCAAGGAAGTAGCTAATAAAGTACATAGTTTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACTCAAGCTGTCAATGCAAACACCCCTATCTTAGATACAACAAAGGGAACTGCATATCAAGAATCTGATCGAGTTTGGCGTGCAAAAGACATAGCAATCCCAGAAAAGGCTTGTGCATGGATGCCTCACGGTTTCATGAGCGTAAATACAAAGTTAGCAGCTGGGAGAGCTTTTTTGAAATCCCTGTATGAGCAGTATGCCGCATGGGGTGTTGATCTAGTGAAACATGACTGTGTGTTTGGTGATGACTTGGAATTAAATGAAATAAGCTATGTTTCAGAGGTTCTCAGTGAGCTTAATCGCCCTATTGTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCAATGGCCAAGAGTGTCAGTGGACTAGTCAACATGTATCGAATAACCGGTGATGATTGGGATTATTGGGAGGATGTCGAGGCTCATTTTGACGTAACAAGGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATGCAGGTTCAAATAATGGTCCACACAGGTTTAGTAGGCTCAATCTAGAAGAAAAAAGGACGCAGATGACTTTGTGGTCTTTGGCGAAGTCTCCCCTTATGTATGGAGGGGATATGCGGAAGATCGATTCCATCACATACCAACTTATAACAAATCCTACCCTGCTAGAGATTAATTCCTTCAGCTCAAATAATATGGAGGCATGTGAGCCATCTAATTTTTTTTGGGAAAATAGGCACTTTCCTTATATCACAAGCTCAAATAACTTGAAGCACGCTGGAGGGAAAAAGCAAAGACCGAAGCAAGGAACAAAGAAAACATCATCGTACACACATTCATTAGGTTTGACTGGCTGTAGCGAATCAAAGGCGAGTGGTTGGTCTATTGAAAGTCATAGCCATAATCAATATCTTCAAACAATCTGCTGGAAAAAGGGTGCAGAAAACCAGCACCAACCTCCATTCTGCGTAAACAAGAGAGAACTTGAACTCAGATTAGATGGTGAGACTATGTATCAACAGGATTACCGAGGGAAACACCAACTGGTTGCTACTGACAGAATGAAATTTTGCTTAGACGGTTCTCCAAAACGAAAGGTTACTTCTAAAGAGTCCAAGAGAGGAACATTTTCTCCGTGCAGATGGGATTCTAATCAGATCTGGGAACTGCACTCAAATGGAACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAAAGTTTGTTGAAGCTGAGGCTAATGCTGGAGGGATTCGCTCTTGGATTGCAACAGGAAGAAAAGGGGAAATCTACCTTGCTTTCTTCAATCTAAGCGATAAGAAAACCGAGATATATGCAAAGACATCATATCTGGGGAAGGTTCTTCCTGACAAAAGGATCGATTCATGCAAGGGGAAGGAAGTGTGGAGTGGAAAGAACGTAATCACAACACAGGGGACGATATCAATGGACGTGGAAATCCATGGATGTGCACTATTTGTTCTAGACTGCAACTAG 2004 0.4281 MIVHHAYVLAVMKCFSLCLVSFWVLLPLCLPSVSSQNIPESGKQQASLPPRGWNSYDSFCWTISEDEFLQSAEIVSERLKAHGYEFVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMLPDPGRWPSSTGGKGFKEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGTAYQESDRVWRAKDIAIPEKACAWMPHGFMSVNTKLAAGRAFLKSLYEQYAAWGVDLVKHDCVFGDDLELNEISYVSEVLSELNRPIVYSLSPGTSVTPAMAKSVSGLVNMYRITGDDWDYWEDVEAHFDVTRDFSTANMIGGKGLKGNSWPDLDMLPFGWLTDAGSNNGPHRFSRLNLEEKRTQMTLWSLAKSPLMYGGDMRKIDSITYQLITNPTLLEINSFSSNNMEACEPSNFFWENRHFPYITSSNNLKHAGGKKQRPKQGTKKTSSYTHSLGLTGCSESKASGWSIESHSHNQYLQTICWKKGAENQHQPPFCVNKRELELRLDGETMYQQDYRGKHQLVATDRMKFCLDGSPKRKVTSKESKRGTFSPCRWDSNQIWELHSNGTMVNSYSGLCATVKFVEAEANAGGIRSWIATGRKGEIYLAFFNLSDKKTEIYAKTSYLGKVLPDKRIDSCKGKEVWSGKNVITTQGTISMDVEIHGCALFVLDCN 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03962 667 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 20 666 IPR002241 GO:0004553|GO:0005975
Vimu11g03962 667 Gene3D - 581 666 IPR013780 -
Vimu11g03962 667 PRINTS Glycosyl hydrolase family 27 signature 43 62 IPR002241 GO:0004553|GO:0005975
Vimu11g03962 667 PRINTS Glycosyl hydrolase family 27 signature 352 373 IPR002241 GO:0004553|GO:0005975
Vimu11g03962 667 PRINTS Glycosyl hydrolase family 27 signature 137 158 IPR002241 GO:0004553|GO:0005975
Vimu11g03962 667 MobiDBLite consensus disorder prediction 422 444 - -
Vimu11g03962 667 SUPERFAMILY Glycosyl hydrolase domain 584 664 - -
Vimu11g03962 667 Gene3D Aldolase class I 40 397 IPR013785 -
Vimu11g03962 667 Pfam Alpha galactosidase A 62 158 IPR002241 GO:0004553|GO:0005975
Vimu11g03962 667 Pfam Alpha galactosidase A 219 394 IPR002241 GO:0004553|GO:0005975
Vimu11g03962 667 CDD GH27 49 394 IPR002241 GO:0004553|GO:0005975
Vimu11g03962 667 Pfam Alpha galactosidase C-terminal beta sandwich domain 585 664 IPR041233 -
Vimu11g03962 667 SUPERFAMILY Ricin B-like lectins 508 584 IPR035992 -
Vimu11g03962 667 SUPERFAMILY (Trans)glycosidases 43 394 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03962 Vimu-Chr11 61485459 61492173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03962 9 499 Glycoside Hydrolase AT3G26380 63.286 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03962 - - gmx:100783705 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03962 11 61485459 61492173 Vimu11g03962 11 61485459 61492173 ECH
Vimu11g03962 11 61485459 61492173 Vimu6g01582 6 14678583 14684280 PCT