Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01578 ATGAATCCGGAGATAGAGACTTGGACAGTATTGGTTGGTGTTCTGTGCATCTTGGTGTTCATTGTGAAGGAGTTTGTTATGGGGGGAAAGAGTTCGAAAGGAAGTGGTAGGAGGTATGATTATGGTGCTTCTTCATCTTCATGGGATAATAATAACTATGGTGGATACCCTCCACAATCACCGTATCCTTCTTATCAAACACCTCGGCACCACCATGCATCGGCATCAGCTCCATTTTATGATTATGCTCAGCCGAAAAGGAAGTTGGATAGGAAGTATTCAAAGATAGCTGATAACTACCGTTCCTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGTGTTATCTCGTCATTCAATCGAAAAAGTTTACATGACATTGGAAGTGGCCAAAACCCGTATGAGCAAGCAATTTCTATTATTGGGAAAACTCTATCAGCTTTTGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCGTCTACACATGACCAAGATGTATTTAGTTTCTTTTCGGAAGAGAGGTTCTGCAATGGATTTGAGGAAGTTCTATCACGATACAGACAAATTATTCCTTACCTCAAACTTGCAGGACCCACATCATTTGCCCCTATTATTGAAATGGCTATGACAATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTGATAATTGCAGATGGACAGCTTCATTTGGTTTTGCTTGGAAATGCTAACATGCTGGCTTCGAAAACTAATACTCAGTATTTATCACAGGTAACTAGAAGCGTTGACACAGAAAATGGCAACTTGAGTCCACAAGAGAAGAACACAATAGATGCAATAGTTAAAGCAAGTACAATTCTGCATTCTTATATTCTCTTAAATTGCAGTGAGTATCCACTATCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACAAGGAATGTAGATTCAAGCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAATACAAGGCAACCATAGAGCTTGGCATATTGGGTGCAAGGAGGGGTCATTCACCAGACAGGGTTGCTCTGCCTCCACCTCTTTATGGTAGGACTTCTTCCAGCATCAGCACAAAATCGACAAGATCAAACAGTTTTCATCAGAGGGCACCTACAAACACTAGCTATGACAACAGTGTTCACACGGAGGCATCTGCAAGTTTGCGCGATTTGCCTCACCAATGCGAAAGATATGGCCTTTGGTTGTGGGCATCAGGTGATTCATCTTCATTAATGTATTTAAGGCTACTTGTTGTGAGTGTGGAGAATACCTCCAATTCTGTCCCATTTGCCGGAGCACGATCAAAACCAAAATAA 1497 0.4102 MNPEIETWTVLVGVLCILVFIVKEFVMGGKSSKGSGRRYDYGASSSSWDNNNYGGYPPQSPYPSYQTPRHHHASASAPFYDYAQPKRKLDRKYSKIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGVISSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLSRYRQIIPYLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQLHLVLLGNANMLASKTNTQYLSQVTRSVDTENGNLSPQEKNTIDAIVKASTILHSYILLNCSEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTRNVDSSRKETDFALSALMEIPSQYKATIELGILGARRGHSPDRVALPPPLYGRTSSSISTKSTRSNSFHQRAPTNTSYDNSVHTEASASLRDLPHQCERYGLWLWASGDSSSLMYLRLLVVSVENTSNSVPFAGARSKPK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01578 498 Pfam Copine 143 391 IPR010734 -
Vimu6g01578 498 MobiDBLite consensus disorder prediction 398 438 - -
Vimu6g01578 498 PANTHER COPINE FAMILY PROTEIN 1 74 419 - -
Vimu6g01578 498 MobiDBLite consensus disorder prediction 410 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01578 Vimu-Chr6 14654635 14658099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01578 K16280 - gmx:100798816 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03953 11 61425555 61430068 Vimu6g01578 6 14654635 14658099 PCT