Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03953 ATGCTTCTAGAGCTTGAGACTTGGACTGCTTTGGTTGTTTTGTTTCTGCTTGTGTTGATTCTGAAGGAGTCGATCATGGGAGGTAAGAGTTCGAAAGTTCGTGAAAGAAGGCATGCTTCATCGTATGGATCTGCTGGTTCATCGTCTTCATGGGATACCTATGGATACCCTCAGACACCAAATGTTTACCCACAACAAAATAATTATCATACGCCTCTTCATAACCGTGCCCCCACTCCATTCCACGACTATTCACAGCCAAAAAGGAGGTTGGATAGGAGATACTCCAGAATAGCTGATGATTACAATTCACTTGATGAGGTTACCAGTGCTCTTTCACACGCTGGACTCGAATCTTCTAACCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCGTTCAACCGAAAAAGCTTACATCATATAGGAAGTGACCATAATCCTTATGAACAAGCAATCACTATTATTGGGAAAACTTTAAGTGCTTTTGATGACGATAATTTGATTCCTTGTTTTGGTTTTGGAGATGCATCAACGCATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAAGAAGTTCTGTCAAGATATAGAGATATTGCTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCTCCTATTATTGAGATGGCTATGACTATAGTTGAACAAAGTGGGGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGCTGCAAGCAACTCCATCCGGTCACAACTTTCACCAGCATTCTTTTTGGACTGTAGTTTGGATTGTCAAAGAATCTGCTGGCATGGGCAGTGAGTATCCACTTTCAATAGTTTTGGTGGGGGTTGGTGATGGACCGTGGGAAATGATGAAGGAGTTTGATGATAACATTCCAGCCCGAGCATTTGACAATTTTCAGTTTGTGAACTTTACAGAAATAATGTCAAGGAATGTAGATTCAAGAAGAAAAGAGACAGACTTTGCTCTATCAGCTCTGATGGAGATACCTTCCCAATATAAGGCAACTATAGATCATGGCATCCTGGGTGCACGGAGGGGACATTCACCGGACAGGGTTCCTCTGCCTCCACCTCATTATGAGAGGACTTCTATCAGCAGCACAACATCTTTTCGTCCAAACAGTTCTCAGCAAAGTGCACCTACGTATTCTGAGTTTGATAATGTTAACATGGCATCATCTTCAGGTGGCTTATATGATAACAAGGTTTGTCCAATTTGTCTGACTAACGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGAATGTGGAGAAAACCTCGAATTCTGTCCCATATGCCGAAGCACAATCACTACAAGAATAAAGCTTTACTAG 1398 0.4235 MLLELETWTALVVLFLLVLILKESIMGGKSSKVRERRHASSYGSAGSSSSWDTYGYPQTPNVYPQQNNYHTPLHNRAPTPFHDYSQPKRRLDRRYSRIADDYNSLDEVTSALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSDHNPYEQAITIIGKTLSAFDDDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYRDIAPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQLQATPSGHNFHQHSFWTVVWIVKESAGMGSEYPLSIVLVGVGDGPWEMMKEFDDNIPARAFDNFQFVNFTEIMSRNVDSRRKETDFALSALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPHYERTSISSTTSFRPNSSQQSAPTYSEFDNVNMASSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCECGENLEFCPICRSTITTRIKLY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03953 465 MobiDBLite consensus disorder prediction 379 404 - -
Vimu11g03953 465 SUPERFAMILY RING/U-box 416 461 - -
Vimu11g03953 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 465 IPR013083 -
Vimu11g03953 465 MobiDBLite consensus disorder prediction 364 404 - -
Vimu11g03953 465 PANTHER COPINE FAMILY PROTEIN 1 38 442 - -
Vimu11g03953 465 Pfam Copine 144 360 IPR010734 -
Vimu11g03953 465 ProSiteProfiles Zinc finger RING-type profile. 422 455 IPR001841 -
Vimu11g03953 465 Pfam Zinc finger, C3HC4 type (RING finger) 419 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03953 Vimu-Chr11 61425555 61430068 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03953 K16280 - gmx:100800161 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03953 11 61425555 61430068 Vimu11g03953 11 61425555 61430068 ECH
Vimu11g03953 11 61425555 61430068 Vimu6g01578 6 14654635 14658099 PCT