Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01576 ATGTTACGTGATAATCTTATAAAGAAGCTCCTCCTTACACATGACCCAGATGGTCGTAGGTTGGATTCTGAGGCAATTGTTCTTGCAGTGACTTCTAATTTATATTCTGCTTCCTTTCATGAGACGGATATAACTGAAATTGAAACGATTGGTTGTAGTGAATCGATGCTCTGCAGATGCTCTGGTGAAGGTGATATTAACTCAAGGGTCATAAATTTGTTTGATTTGATAGGAAAGTATAGCTGGGACGCAAAAGTAGTTCTAGTGCTTGCTGCTTTTGCTGTAAGATATGGTGAATTTTGGCAACTTATGCAGCTACATCATGATAACAGTTTGGCAGCTTTAATTTCAAGTATTAAGAAGCTTCCCTGCAACTTAAAGCCACTGAAGCTACAAATCAAGGCATTGAGCTTGTTGGTTGAGACCATGATGGATGTGGCTATGTGTATAATTAAGTACTCAGATTCAGCAATAATTGCTGCTTGGGAGCTTTCGAGTTTGGCGTATAGATTAAGTGGCACAGGCTGCAATCTTAGAAGACAGGTGGATCTGTGTTACGAAGAAATAGAGAGAAACTTGTATCAGAGGCTGTCGGATCTTGCTCGTGCGGAGCACATTGATAATCAAAAGAGTCTCACTTTATTTTTTCCTTCAAATAATTACTTGCCACTGAAGGATTGCTCAACAGAAGTAAAGTTAGGTGTGTCTGAGCTGAAAAACCAGATAGTTCTGTTGTTGATCACAAAACCACAGCTACTCAGCCCAGTGGATATATTCTTACTTGTCCAGAAAACATGCGATCATCCTCTGAATGAGAGGCTGAAGGAGAGTTATAAGATTGTGTGGATTCCCCTTCCATCTTCTGATTCATGGACTGAAGCTGAAGAAAGTAGTTTTAATTTTCTGTCAGATTCCTTGCCTTGGCATGCTGTTCGGAAACCAAGGTTACTTAGCCCAGCAGTGGTCAAGTACATAAGGGAAAGATGGAACTACAAGGATGAGCCCATCATGGTGGCTCTAGATTCGAAAGGGAAAGTCACAAATTACAATGCTCTTGATATGATCAACATTTGGGGAGCCAAAGCTTACCCTTTTTCAGCTTCCAAAGAGGAAGAGCTGTGGCAAGACCAAAATTTGACAATGGAACTTTTGCTGGATGAGATCAATCCTCTCCTTGCTTATTGGGTTGAGCAAGGCAAAAGTATTTGCCTTTATGGGAGTGAAAACATGGTTTGGATCCAACAATTCAATGATAAGATAACCGAGCTCAAACGAGCAGGTCTGCAGCTGGAAACAATATATGTTGGTAATAGTCAATTGGGTGAACATGTTAAGCAAATAATGGCAAGAAGTGGTGGAACAAGTCGCAGTGATCCACTTTCCTTCACAAACGTGCAATTCTTCTGGCTTCGGTTGGCGAGTATGTTAAGGTCTAAACTCAGACTAGGGAAGACACCAAGTGGTGATTATGTACTAGCAGAGTTGTCAGCTTTGCTTGAAATGGATGATAAGGAGGAAGGTTGGGTAGTGATTGGAAGTGGGGGTTCAACAGATATTATCAGGCTTCAAGGGATGCAGGTGATGGAATTCTTAAGGAAATGTTCTGTGTGGAGAGAAAATATAACCAAGTTTGGATTGTGGGGTTCTCCAAGAAACATCCTAGAAACTGATTTTGTTGAAGGGAGTTGCACTCACTCTTACTTTGTTCCCTCAAGAAAAAATGGAAGACTGAGTCAAGGAACTGTAATTTGTCAAGTGTGCAAGCGTCCCATGAAGAAGTTTGTGGTGTACAAGCCATGA 1800 0.4106 MLRDNLIKKLLLTHDPDGRRLDSEAIVLAVTSNLYSASFHETDITEIETIGCSESMLCRCSGEGDINSRVINLFDLIGKYSWDAKVVLVLAAFAVRYGEFWQLMQLHHDNSLAALISSIKKLPCNLKPLKLQIKALSLLVETMMDVAMCIIKYSDSAIIAAWELSSLAYRLSGTGCNLRRQVDLCYEEIERNLYQRLSDLARAEHIDNQKSLTLFFPSNNYLPLKDCSTEVKLGVSELKNQIVLLLITKPQLLSPVDIFLLVQKTCDHPLNERLKESYKIVWIPLPSSDSWTEAEESSFNFLSDSLPWHAVRKPRLLSPAVVKYIRERWNYKDEPIMVALDSKGKVTNYNALDMINIWGAKAYPFSASKEEELWQDQNLTMELLLDEINPLLAYWVEQGKSICLYGSENMVWIQQFNDKITELKRAGLQLETIYVGNSQLGEHVKQIMARSGGTSRSDPLSFTNVQFFWLRLASMLRSKLRLGKTPSGDYVLAELSALLEMDDKEEGWVVIGSGGSTDIIRLQGMQVMEFLRKCSVWRENITKFGLWGSPRNILETDFVEGSCTHSYFVPSRKNGRLSQGTVICQVCKRPMKKFVVYKP 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01576 599 Pfam Sieve element occlusion N-terminus 46 154 IPR027942 -
Vimu6g01576 599 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 160 598 IPR039299 GO:0010088
Vimu6g01576 599 Pfam Sieve element occlusion C-terminus 368 598 IPR027944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01576 Vimu-Chr6 14641235 14644531 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01576 - - pvu:PHAVU_001G256100g 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03946 11 61404623 61408368 Vimu6g01576 6 14641235 14644531 PCT