Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03946 ATGGAAATGGTACCTCGGAAGATGCAATCCAGGGCTAGCCGCCATATTTTTTCAGCATCAGATGACACTACAATGACCAAAAATGTTCGAGCCACCCATGCTCCTGATGATCGACACGTTGAAGTTAGACCTCTTCTGAATGTTGTCCAAGACATATTTCTCCGTGTTGCCTCTCTCATCCCTGACATTGTTAAGGGAAAACCAGTGCAAATGGGTGCTATGAAGGACAGTATCCAGCAATCAAATCTGGCCGAGGTGCTAGATATTTCGTACCACACAATCAACAGAATTTCCTGCGAGATATGTTGCAAGTGTTCGAGTGGTGATGTACATGCCACGACCATGGGAATACTGAACATGCTCTCAGGCTATTCATGGGATGCGAAGGTGGTAATTGCGTTAGCAGCTTTTGCAGCCAACTTTGGGGAGTTTTGGCTGGTGGCTCAGCTTTATGCCACCAACCGTCTTGCTAAGTCTGTTGCAAAGTTGAAGCACATCCATGAAACACTTGAACAAGTGGATGATTTGGGACTAAAGTTCGAAACAATCAATAACCTTTTAAAGGTAATGTTGGATGTAACCAATTACATTGTTGAATTCCATGAGCTTCCCTCTCAGTACATTGACCCTGAGGCGCCGGAGATGTTGACTGCCTCCACTCTTATCCCCGGTGCTGTCTATTGGACCATTCGGAGTACTGTGTCCTGTGCATCGCATCTTTTAGGCATAACTGGTTTGATTCATGGATATATGACAACAGTGGTAGAGAGTTGGGAGCTTTCCAGTTTGGCGCATAAGCTTGATAACCTAAATGGACACCTTCGCAAGCAACTCACCCTTTGTCAACTGCATTTAGATGATAACAAACAGAGAGAAGCATTTGAAACACTTCGGCTCCTTTTTGAGACACCCCACCAAGATAATTTGAAGGCTCTTAAAGCTATGTTTTGCAGTAACGATAATCCGTTGCCATTGTTTGATGGTTCTTCCAAACAAAGGGTTAACCCTGAATACATTTTCTCTTCTCACTATCTGCAAATATTATATGTTAGCATTGATGTATTGAGGAGGAAAATTGTTCTGCTCTACATATCAGACCTACATAACGTCCCTGATCAAGAGCTTGTTATATTTGAACAACTGTACCTAGAGTCACGTCAGGATTCAACCAGGTTAGAGAGTCAGTATGAACTGGTTTGGATTCCAGTTGTGGACAAGGCAATCCCATGGACTGAATTGAAGCCGAAGCTTGAGAAGCTGCAATCAACGATGTCATGGTACTCAATTTATGACCCTTCTGTTCTGGAGCCTGCAACCATCAGGTACATTAAAGAAGTATGGCTTTTCAAAGCGAAGCCTATACTTGTTGTGTTGGATCCCCTAGGGAAGGTTGTTAATCTGAATGCATTACCCATGATGTGGATTTGGGGAAGCTTGGCTTACCCTTTCTCCAGCTCAAAGGAGGAAGCATTGTGGAATAAAGAAACATGGGGACTCCTTCTATTGGCAGATACAATCGATCAATCGCTTCTGTATTGGATGTCAGAAGGCAAATATATATGCTTGTACGGAGGGGACGATATGGATTGGATCCGCAAATTCACAAGCACTGCACATGCACTGGCAAAAGCTCTGCAACTACCACTAGAGATGATTTATGTTGGGAAAAGCAATCCAGGGAAGAAAGTTCAAGAAATCAACAATGCAATACAAGGAGAAAAATTGAGCACCGTGCTCCCTGACCTTGCGATAATTTGGTTCTTCTGGGTTAGGCTAGAGAGCATGTGGCACTCCAAATCACAACATAGCAAGACAGTAGAGGAAGACCACATAATGCATGAAGTAATGAGAATCCTAACCTACGATAGTGGTGACCCAGGATGGGCCGTAATTAGTCAAGGCACGGGAACGATGGCACAGGGTAAGGGAGATACGTTTCTAAGGTGCCTGAACGAACATGAGCAGTGGATAGAAACAGCAAAAGATAAAGGAATCTTGCCAGCAATGGCTGATTATATACAAGGACTACAAACCCCTCACCACTGCAACCGCTTGATACTTCCAGGTGGCAGTGGCGGGGTCCCAGACAGAGTGGTCTGCGCGGAATGTGGCAAAACAATGGAGAAGTTCTACATGTACCGCTGCTGTAACGAGTAA 2157 0.4427 MEMVPRKMQSRASRHIFSASDDTTMTKNVRATHAPDDRHVEVRPLLNVVQDIFLRVASLIPDIVKGKPVQMGAMKDSIQQSNLAEVLDISYHTINRISCEICCKCSSGDVHATTMGILNMLSGYSWDAKVVIALAAFAANFGEFWLVAQLYATNRLAKSVAKLKHIHETLEQVDDLGLKFETINNLLKVMLDVTNYIVEFHELPSQYIDPEAPEMLTASTLIPGAVYWTIRSTVSCASHLLGITGLIHGYMTTVVESWELSSLAHKLDNLNGHLRKQLTLCQLHLDDNKQREAFETLRLLFETPHQDNLKALKAMFCSNDNPLPLFDGSSKQRVNPEYIFSSHYLQILYVSIDVLRRKIVLLYISDLHNVPDQELVIFEQLYLESRQDSTRLESQYELVWIPVVDKAIPWTELKPKLEKLQSTMSWYSIYDPSVLEPATIRYIKEVWLFKAKPILVVLDPLGKVVNLNALPMMWIWGSLAYPFSSSKEEALWNKETWGLLLLADTIDQSLLYWMSEGKYICLYGGDDMDWIRKFTSTAHALAKALQLPLEMIYVGKSNPGKKVQEINNAIQGEKLSTVLPDLAIIWFFWVRLESMWHSKSQHSKTVEEDHIMHEVMRILTYDSGDPGWAVISQGTGTMAQGKGDTFLRCLNEHEQWIETAKDKGILPAMADYIQGLQTPHHCNRLILPGGSGGVPDRVVCAECGKTMEKFYMYRCCNE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03946 718 Pfam Sieve element occlusion C-terminus 486 717 IPR027944 -
Vimu11g03946 718 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 8 717 IPR039299 GO:0010088
Vimu11g03946 718 Pfam Sieve element occlusion N-terminus 20 305 IPR027942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03946 Vimu-Chr11 61404623 61408368 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03946 - - gmx:100799626 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03946 11 61404623 61408368 Vimu11g03946 11 61404623 61408368 ECH
Vimu11g03946 11 61404623 61408368 Vimu6g01576 6 14641235 14644531 PCT