Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01564 ATGGCCATAGTAAACACCAAGAGCCTAAAACTCCAACTCCCACCTTCAAAACCCACCCTTTCTCTCTTTTCCCATCTCAACCTTCCAAAGGGTCTAACCTCCACCGTTAACGCCACCTTGTCAGCAACAACATCTTCCATGGCGGGATACTGCGACGCGGCTTTTGCGGCGTCGCAGATAGCCCAAATAGCGGAGGGCGACAACCGTGGGCTTGCGCTGTTGCTGCCGGTGGTTCCCGCCTTAGCGTGGGTGCTGTTCAACATTCTGCAGCCGGCGCTGAACCAGGTGAACCGCATGCGAAGCAGCAAGGGGGTCATGGTTGGGCTTGGGCTTGGACTCGGCGCCTCGGGCTTGGTGTGGAGCCCAGAAGCGTCAGCGAGTGAGATGGGTCTGATTGCGGATGCTGCGGCGGGCAGTGACAACAGGGGTCAGCTTCTGCTGCTTGTGGTTGCACCGGCGATTGGGTGGGTTCTGTTCAACATTCTGCAACCAGCACTTAATCAGCTTAACAGAATGAGATCAAAATGA 528 0.5625 MAIVNTKSLKLQLPPSKPTLSLFSHLNLPKGLTSTVNATLSATTSSMAGYCDAAFAASQIAQIAEGDNRGLALLLPVVPALAWVLFNILQPALNQVNRMRSSKGVMVGLGLGLGASGLVWSPEASASEMGLIADAAAGSDNRGQLLLLVVAPAIGWVLFNILQPALNQLNRMRSK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01564 175 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 30 175 IPR038760 GO:0009523
Vimu6g01564 175 Hamap Photosystem II protein Y [psbY]. 67 101 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vimu6g01564 175 Pfam Photosystem II protein Y (PsbY) 140 172 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vimu6g01564 175 Pfam Photosystem II protein Y (PsbY) 67 99 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01564 Vimu-Chr6 14583044 14583607 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01564 K02723 - gmx:100814665 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01564 6 14583044 14583607 Vimu6g01564 6 14583044 14583607 ECH
Vimu11g03935 11 61347801 61349767 Vimu6g01564 6 14583044 14583607 PCT