Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03935 ATGGCAGCAACAATATCAGCAATGGCCATGATCAACGCCAAATGCCTCAACCCCACATCACCAAAATTCCCGACCAAACTCACACCCTCAAAACCTTCTCTCCTTTCTCTTCCCAAGGGTCTTATCGCCTCGCCCGAAACCAGTAACCTCTCCGTTCCCACAGCCGTCGCCGGAGCCATATTCACGGCCCTCGGAACCTGCGACGCCGCGTTCGCCGCGCAGCAGATAGCGGACATAGCGGAAGGCGACAACCGCGGCCTGGCCCTGCTGCTGCCCATAATCCCAGCCATAGGGTGGGTGCTGTTCAACATTCTGCAGCCGGCGCTCAACCAGATCAACCGCATGCGCAGCACCAAAGGACTCGTCATCGGGTTGGGTCTCGGCGGCTTGGCTGGACTCATGGCGGCGCCGCCACATGCAGCTGCAGCCGAAGTCGCGGCGATCGCCGAAGCCGCGAGTGACAACAGGGGGCAGCTTCTGCTGTTTGTGGTGGCACCGGCTATTGGATGGGTGCTGTTCAACATCTTGCAGCCTGCTCTGAACCAGCTCAACAGGATGAGATCTCGGTGA 570 0.5965 MAATISAMAMINAKCLNPTSPKFPTKLTPSKPSLLSLPKGLIASPETSNLSVPTAVAGAIFTALGTCDAAFAAQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQINRMRSTKGLVIGLGLGGLAGLMAAPPHAAAAEVAAIAEAASDNRGQLLLFVVAPAIGWVLFNILQPALNQLNRMRSR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03935 189 Pfam Photosystem II protein Y (PsbY) 83 115 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vimu11g03935 189 Pfam Photosystem II protein Y (PsbY) 154 186 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vimu11g03935 189 Hamap Photosystem II protein Y [psbY]. 83 117 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vimu11g03935 189 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 188 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03935 Vimu-Chr11 61347801 61349767 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03935 K02723 - gmx:100779397 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03935 11 61347801 61349767 Vimu6g01564 6 14583044 14583607 PCT