Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01554 ATGGTGATAATCTCGTCATGGGAAAAAACGCAATACGCAACGCAACGCATCGTTTCTGTTACGGCATTCCTTACCTCACCCACCACAACACCCAAACACCAAAACCCAACCACACTCCCCTCAACTCATATATCCTCTCAAAAGCTTCAAACTTTCGGACACAAAACATCAAAAAGCTTAGCCCTACTTTTTCTTCTCTCAATTCATCACTTCTCTTTCTTGGTTTTCCTTTTTTTTAGCTTTCCACAAAGTAAAGCCAAAGAGGGAAAGATGGCAATGATTCCGTACCAACTTTCCCGTTTACCTTACCACGATTCCCTCAAAGTACTTGAAGCTGATATACAGCACGCTAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTGTTCTTCAAATGAAATTGGTTTACAATCAGTTGGCTCCTCTCTTCCTGTTATTTCTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTCCATAGGTATCTTAACCTCTTCCACATAATTATATACAAGGTACACAATGATGGTAGATCAAACATGTCTACCCATGGAAGGAAGGCTACCATTGGGGACTTTTATGCCGTTATATTGCCATCTCTCCAAAGGCTTCACGGTAGTTTGGAGAAGTTGGAGGCTGTTGAAGCAGGAGAATCAAGCATAGAAGGTTCAAGTCATGGCAATAAGCTGATTGAAGCAAGTGGGAGACTAACCAATATTGATTTGCAAAGAGAAGATGAATGTGGAATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACAGAAAATCAGAGTCTTGTCCTTTTTGTCGTGGCAGCTTGAGGAGAGTTAATTCAGAGGATCTATGGGTGCTAACTTGTGACGATGATGTTGTTGATGCTGAAACAGTTTCTAAAGAGGATTTATTGCGTTTTTACCTCTATATCAGCAAGCTTCCAAAAGATCACCCAGATGCACTTTTCCTAATGTATTATGAATACCTCATTTAA 1041 0.415 MVIISSWEKTQYATQRIVSVTAFLTSPTTTPKHQNPTTLPSTHISSQKLQTFGHKTSKSLALLFLLSIHHFSFLVFLFFSFPQSKAKEGKMAMIPYQLSRLPYHDSLKVLEADIQHANALAAAIPRAKGGTVLQMKLVYNQLAPLFLLFLQWMDCSCAGFLHRYLNLFHIIIYKVHNDGRSNMSTHGRKATIGDFYAVILPSLQRLHGSLEKLEAVEAGESSIEGSSHGNKLIEASGRLTNIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDDDVVDAETVSKEDLLRFYLYISKLPKDHPDALFLMYYEYLI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01554 346 ProSitePatterns Zinc finger RING-type signature. 265 274 IPR017907 -
Vimu6g01554 346 SMART ring_2 250 287 IPR001841 -
Vimu6g01554 346 PANTHER RING FINGER PROTEIN 41, 151 102 344 - -
Vimu6g01554 346 Pfam Ring finger domain 248 288 IPR001841 -
Vimu6g01554 346 ProSiteProfiles Zinc finger RING-type profile. 250 288 IPR001841 -
Vimu6g01554 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 298 IPR013083 -
Vimu6g01554 346 SUPERFAMILY RING/U-box 241 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01554 Vimu-Chr6 14539464 14541282 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01554 - - vum:124847610 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01554 6 14539464 14541282 Vimu6g01554 6 14539464 14541282 ECH
Vimu6g01554 6 14539464 14541282 Vimu11g01802 11 24756175 24757961 PCT