Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01802 ATGGAAGTGATGGCATACCAGTTTTCTCGGTTACCATACTCAGATTCCCTCAAACTGCTAGAGGCTGATATACAACAAGCAAATGCTTTGGCTGCTGAAATAACCAGGACAAAGGGTGGGACTCTTCTCCAAATGAAATTGGCTTACAACCATTTGGCTCCTCTCTTTCTGTTGTTGCTACAGTGGATGGATTTTTCTTGTACATGCTTTCTACTCAGATATCTTGACCTCTTTCACATAGTTGTATCCAAGGTACACAACGATGGTAGATCAAATATGACTCCTCCTGGAAGGAAAGCAACCATCAGGGAGTTTTATGCTATTATTCTGCCATCTCTTCAAAGACTTCATGGTAGCATGGAGAAGTTAGACATTTGTAAGAGCGGACATTCTAGCATAGAAAGCTCAAGTTATGGCAAGAAATTGATTGAAGGAGATGAAAAACCAATCCATGTGGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCTCGAAAATGGTTTTACCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACAAATTGTCAGAGTCTTGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGTTAATTCTGAGGATCTGTGGGTACTCACTTGTAATGAAGATGTTGTTGATGCTGAAACAGTTTCCAAGGAGGACTTGTTACGTTTCAACCTTTATATCAACAACCTACCTAAAGATCACCCGGATGCACTTTTCTTAATGTATTATGAGTATCTGATTTGA 771 0.4034 MEVMAYQFSRLPYSDSLKLLEADIQQANALAAEITRTKGGTLLQMKLAYNHLAPLFLLLLQWMDFSCTCFLLRYLDLFHIVVSKVHNDGRSNMTPPGRKATIREFYAIILPSLQRLHGSMEKLDICKSGHSSIESSSYGKKLIEGDEKPIHVDLEREDECGICLEPCSKMVLPNCCHAMCIKCYRKWNKLSESCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLLRFNLYINNLPKDHPDALFLMYYEYLI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01802 256 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Vimu11g01802 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 209 IPR013083 -
Vimu11g01802 256 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Vimu11g01802 256 Coils Coil 17 37 - -
Vimu11g01802 256 SUPERFAMILY RING/U-box 152 202 - -
Vimu11g01802 256 PANTHER RING FINGER PROTEIN 41, 151 12 254 - -
Vimu11g01802 256 SMART ring_2 160 197 IPR001841 -
Vimu11g01802 256 FunFam RING/U-box superfamily protein 143 207 - -
Vimu11g01802 256 Pfam Ring finger domain 158 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01802 Vimu-Chr11 24756175 24757961 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01802 - - gmx:100790422 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01554 6 14539464 14541282 Vimu11g01802 11 24756175 24757961 PCT