Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01819 ATGCTTCCCTCTCACTTTCCTCTTCGTTGGGAAAGCACTGGAGACCAATGGTGGTATGCATCTCCCATTGATTATGCTGCTGCAAATGGGCTCTATGATTTGGTCACTGAGCTTCTCCACCTTGACACCAACCTCCTCATCAAGCTCACGTCCCTCCGCCGCATTCGCCGCCTTGAAGCCGTGTGGGACGATGAGTCTAAGTTTGAGGATGTTGCCAAGTGCCGGTCCAAGGTTGCTAGGAATCTCATGCTTGAGTGTGAGATGGGAAAAGGGCACAACTCTCTCATCCGTGCAGGCTATGGTGGATGGCTTCTCTACACTGCTGCTTCGGCTGGGGATGCTGACTTTGTTCTGGAGTTGTTGGGGAGAGACCCTTTGCTGGTGTTTGGTGAAGGAGAGTATGGTGTCACTGACATGCTGTATGCTGCAGCCAGGGGCAAGAACTGTGAGGTCTTCAAGCTCCTGCTTCATTCTGCTCTGTCACGAAAGGAGAGTCTTGCTGTCAGTGGAGGAGAATTGGATGAGAAATTGGATGAAGGGTCTAAGGTTTTCAAGAGGGATGTGATCAACAGGGCCATTCATGCTGCTGCCAGAGGAGGGAATTTGGAAATACTGAAACAGCTTCTAGCAAGTGTTTCTGTTTCTCAAATTTTGTCTTATAGAGATGCCCAAGGATCTACTGTCCTGCATGCAGCTGCTGCAAGAGGCCAGATTGAGGGAGAGTTGATAACTGCAGAAGTAGAGTATGAACAAAATGTTTTGGTTGTGAGAAATCTAACCGAATCCTATAATATTGTAAACTCAACTGATACTCAAGGAAATACAGCATTACATATAGCTTCTTACAGAGGTTACTTACCTGTGGTAGAGTTTCTAATTGGAGCATCTCCCTCATTAGCAACTTTAACCAATAACTATGGAGATACTTTTCTTCACATGGCAGTGGTTGGTTTCAGAAGCCCTGGTTTCTGTAGACTGGAGAAGCACATTGAGCTGATGAAGCAATTGACAAGTGAAAAGATTGTGAGCATGAAGGACATCATCAATGTCAGGAACAATGAAGGAAGAACAGCTCTTCATGTTGCTGTGATGCATAACATCAAATGTGATGTGGTGGAATTACTGATGTCTGTTTCATCAATTGATTTCAACATTCGTGACACTGATGGCATGACCCCTTTGGATCATCTTAGGCAACAAAGATCAAGATCAAGATCAGCATCTTCTGGCTTTTTAATCAAGCACTTACTTTCAGCTGGAGGGAACTCCAATTGTACGGACTACATGACAAGAAATGCTCTTGTTAACCATCTTAGGACTCATGGTATTGGAGCAAGTCCTGGAACATCATTTAGAATACCAGATTCTGAGATATTGTTGTACACAGGCATTGAGAATTCATGTGATAGCAATTATGATGAGGCAAGTGTGGAATCAAATTCATGGTCAAGCGAAATAAACAATTATGAGTCACCCAATTCCCCATGCAACAGCAACAATAGTTCTGTTAATTATGGTGCAAGGCGTTTAAAGTTTCTGCTGCAGTGGCATGGGATAAGAGACACGAAAGAAGCAGCCTCGGAGTTAGAAGATGATGTTTCTGAGAATTCTTTTAGTTCAAGGAAAAACTTGGAGGAACTTCCCATCCCATTGAGGCAAAGATACTCAAAAATGTGTTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACATATGTTCCAAGTGCTTCAGAGAGAAAATATTTTCATGCAGGCCTAATGCAAGGAGTGATTAAGGTAAAGCCACAAGGCCCTCTACCTGTTCATTCAACTTCTGGTCTTTTTCAAGAACTATCTATATCTTCTCATGCTTCTAATAATAAGCAAAATGGTGTTGATATAATGAGACCCTCTTGCTCCAATGAATCAATGGATGGTGGTGGCAGCCTACAGTTGAACTATAAGCGTGGCTCTTTCAATAAGAAAATGATGAACCGCTATTTTTCTTTTGGAGCACATGGTCAGGCTTTGGAAGATGCAAATAGCTGCACAAAGTCAAATCGCAGCTCTAAGAATTTTAGTTCTTTAGTTGCATAA 2079 0.4276 MLPSHFPLRWESTGDQWWYASPIDYAAANGLYDLVTELLHLDTNLLIKLTSLRRIRRLEAVWDDESKFEDVAKCRSKVARNLMLECEMGKGHNSLIRAGYGGWLLYTAASAGDADFVLELLGRDPLLVFGEGEYGVTDMLYAAARGKNCEVFKLLLHSALSRKESLAVSGGELDEKLDEGSKVFKRDVINRAIHAAARGGNLEILKQLLASVSVSQILSYRDAQGSTVLHAAAARGQIEGELITAEVEYEQNVLVVRNLTESYNIVNSTDTQGNTALHIASYRGYLPVVEFLIGASPSLATLTNNYGDTFLHMAVVGFRSPGFCRLEKHIELMKQLTSEKIVSMKDIINVRNNEGRTALHVAVMHNIKCDVVELLMSVSSIDFNIRDTDGMTPLDHLRQQRSRSRSASSGFLIKHLLSAGGNSNCTDYMTRNALVNHLRTHGIGASPGTSFRIPDSEILLYTGIENSCDSNYDEASVESNSWSSEINNYESPNSPCNSNNSSVNYGARRLKFLLQWHGIRDTKEAASELEDDVSENSFSSRKNLEELPIPLRQRYSKMCSLPNNKRTLSIRTYVPSASERKYFHAGLMQGVIKVKPQGPLPVHSTSGLFQELSISSHASNNKQNGVDIMRPSCSNESMDGGGSLQLNYKRGSFNKKMMNRYFSFGAHGQALEDANSCTKSNRSSKNFSSLVA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01819 692 SMART ANK_2a 224 268 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 389 425 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 306 346 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 272 301 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 354 385 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 188 216 IPR002110 GO:0005515
Vimu11g01819 692 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vimu11g01819 692 MobiDBLite consensus disorder prediction 673 692 - -
Vimu11g01819 692 SUPERFAMILY Ankyrin repeat 105 434 IPR036770 -
Vimu11g01819 692 ProSiteProfiles Ankyrin repeat region circular profile. 272 293 - -
Vimu11g01819 692 Pfam Ankyrin repeats (many copies) 266 314 IPR002110 GO:0005515
Vimu11g01819 692 Gene3D - 15 441 IPR036770 -
Vimu11g01819 692 ProSiteProfiles Ankyrin repeat profile. 272 304 IPR002110 GO:0005515
Vimu11g01819 692 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 4 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01819 Vimu-Chr11 25236941 25239529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01819 194 395 Miscellaneous Gene Families AT2G31820 33.005 4.99e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01819 - - gmx:100791999 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01541 6 14438626 14442217 Vimu11g01819 11 25236941 25239529 PCT