Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01539 ATGGCTTCCATTGCCGGATCCAATTGTGTCGCTCTTCGAACTGCCAACTTCGCCGCCTCTGGTAACCGGAAAGTCTGTCAGATCCGGCAATGGTCTCCGGTTCTCACGAATCACCGTTCCGTTTCCGGTCTTCGTCACCAATCGAATGCTCCGTTTAGATCCTCTGTTGTGAGAGCGCAGGTTGCTACTCTGGAGGAAGCGGGAACCGGAGCAACTCAGAAAGTGGAAGCGCCTGTTGTAGTGGTGACTGGAGCTTCCAGAGGCATTGGCCGAGCAATTGCATTGTCGTTAGGCAAAGCAGGTTGCAAGGTTCGTCTTCGCCAATCGTTGAGCGTTCTGGTCAACTATGCAAGGTCATCGAAGGAAGCCGAGGAGGTTTCCAAGGAGATTGAGGAATTTGGTGGGCAAGCTCTTACATTTGGTGGAGATGTTTCTAACGAAGCTGATGTGGAGGCTATGATTAAAACTGCAGTGGATGCTTGGGGAACAGTTGATGTATTGATAAACAATGCAGGTAAGTTGGAAGACTCTGGTGGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTAACTGGTGTTTTTCTTTGCATACAGGCTGCTGCTAAAGTTATGATGAAGAAAAAGAAGGTGACATACCGCAAAACTGGAAGGATAGTCAATATTGCGTCAGTTGTTGGTTTGGTTGGCAATGTTGGGCAAGCCAATTATAGTGCTGCAAAAGCAGGAGTAATTGGCTTGACAAAGACAGTTGCAAAGGAATACGCTAGCAGAAACATCACCGTTAATGCAGTTGCTCCCGGGTTTATTGCATCTGACATGACTGCCAAGTTAGGACAGGACATTGAGAAAAAGATATTGGAGACAATCCCATTAGGAAGATATGGCCAACCAGAGGAAGTTGCCGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTTCTAGTTACATCACTGGGCAGGTTTTCACCATTGATGGAGGTATGGTGATGTAA 1026 0.462 MASIAGSNCVALRTANFAASGNRKVCQIRQWSPVLTNHRSVSGLRHQSNAPFRSSVVRAQVATLEEAGTGATQKVEAPVVVVTGASRGIGRAIALSLGKAGCKVRLRQSLSVLVNYARSSKEAEEVSKEIEEFGGQALTFGGDVSNEADVEAMIKTAVDAWGTVDVLINNAGKLEDSGGITRDGLLMRMKKSQWQEVIDLNLTGVFLCIQAAAKVMMKKKKVTYRKTGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDIEKKILETIPLGRYGQPEEVAGLVEFLALNQASSYITGQVFTIDGGMVM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01539 341 CDD BKR_SDR_c 79 340 - -
Vimu6g01539 341 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 80 340 IPR011284 GO:0004316|GO:0006633|GO:0051287
Vimu6g01539 341 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 235 263 IPR020904 GO:0016491
Vimu6g01539 341 Pfam Enoyl-(Acyl carrier protein) reductase 84 339 - -
Vimu6g01539 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 173 IPR002347 -
Vimu6g01539 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 248 267 IPR002347 -
Vimu6g01539 341 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 228 236 IPR002347 -
Vimu6g01539 341 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 74 340 - -
Vimu6g01539 341 Gene3D - 55 341 - -
Vimu6g01539 341 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 77 341 - -
Vimu6g01539 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 341 IPR036291 -
Vimu6g01539 341 PRINTS Glucose/ribitol dehydrogenase family signature 248 267 IPR002347 -
Vimu6g01539 341 PRINTS Glucose/ribitol dehydrogenase family signature 222 238 IPR002347 -
Vimu6g01539 341 PRINTS Glucose/ribitol dehydrogenase family signature 269 286 IPR002347 -
Vimu6g01539 341 PRINTS Glucose/ribitol dehydrogenase family signature 79 96 IPR002347 -
Vimu6g01539 341 PRINTS Glucose/ribitol dehydrogenase family signature 162 173 IPR002347 -
Vimu6g01539 341 PRINTS Glucose/ribitol dehydrogenase family signature 302 322 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01539 Vimu-Chr6 14423915 14426999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01539 2 341 Acyl Lipid Metabolism Gene Families AT1G24360 62.941 2.89e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01539 K00059 - gmx:100809809 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01539 6 14423915 14426999 Vimu11g01822 11 25257727 25260622 PCT