Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01510 ATGAAGATCAAAAAACTAATGCCGTTGGATGCCGAAAAGGCACGCTTGAACTATTGTCAAAATGAACTTCCAGTAGAAGATTTTGTGTTGCTTGCTATGCGCGTCTACGATGCCTTACAGAAGAAATATCTGAAGACGCTTCTGTTCTGTGTGTGCGAAGCAGTGGACGGACCAATGATTGAGGAATATGCATTTTCCTTCAGCTATTCCGACTCTGACAACCAAGAGGTTTCAATGGACATCAACCGAACTGGAAACAAAAAAAACCGGGGGGCCTTCAAGTGTAATTCGACTACAGAAATTACTCCCCAACAGATGAGGAGTTCTGCGTGTAAAATGATCCGTACTCTGGTTCAGTTGATGAGAACTCTGGAGAAAATGCCAGACGAGCGTACCATCCTGATGAAGCTCCTCTACTACGATGATGTGACGCCTGCTGATTATGAGCCTCCTTTCTTCCGGGACTGCACAAGTGAAGAAGCTTATCATCCATGGGAGAAAAATCCGTTGAAAATGGAGGTTGGGAATGTAAACAGCAAGCACTTCGTATTAGCTCTTAAGGTGAAGAGTGTACTCGACCCTTGTGAAGATGATAACGAAGAAATCCCGGACGATATGAGCAATGGCGACGATTCAATGCAACAGAATGAGTATTATGATACTGACAGTGAGGTAAATGGGATGGATCCGGTGGAAGATGAGCAACAGCGGGTCCGGGTCAAGGAGTGGATCAACTGTTGTCACCGTGACACCATTGAACTTACTGATGTTCTATCGAATTTTCCAGACATCTCCGTGATCATGGATAAGTTTATTGAGGAAGGTGTGCTGTCGAAGATAGGGAAGGAATCCTACGCCATTAACAAGGACAAGAACCTTGAATATGAGTTCGCCATTGTGAAAGAAGAAATCGACGGTCAGCTTCCTAAAGTTTTTGACAGAGCTTTGCCAGTTGAAGATCGCTTATACATGAAAGCTCTCTATCATGCTCTTCCGATGACGCACGTGTCAATCACTAAGCTTCAAAGTTTGCTTGAGGGAGAAGTAAACCAGAAGGCAGCTCGAAAGATAATTGATAAAATGGTGCGGGATGGGTTTGTCGAACCGAAAGGCAACAAAAGATTAGGGAAACGTGTTATCCATTCTGAGTTGACTGAAAGGAAATTCATTGAAGTCCAGAAAGCTCTAAGTGCTACGGAAGCTATGGATGTTGATCACTGTGAACCAAATAGCAAGTCCAAATTAACTGATTTTCGTTTAAATGGAAACAACCATGACGTGTCTACATGTGGGGTTCTTCACTCCATTGGATCAGATCTAACCCGAATGAAAGTGACATCTGATACAAACTATACTGACTCCGGGAATGGACAGAACGCAACAAAGGCAAAAGAGCCGGGAAACACCCCCATAAGCAGGCCTGTTATTTCAAGAGAGAGTTTCGCGATAGGCAAAGAGAATGGAAGAACACACGGAATTGCAAATCAAGGGGACGAAGGTGATACAATTATATGCAGTAAGTCTTCCCAAGAGAAACGGTCAAGGAAAACTAGCGCGGTGAAGGAGCCTATCCATCAAAATATAAAGCGACAGAGATCCGAGTTTGTGAGTCTTGACATAAATGTAGATCCCGGTCGCTCCACTCCGAAGAAGCCAGTTTGCCCTAGAGAGATCCCAAGGAGTCGGTCCGAACGTAGACCCCACCCTTTGCTTGACGAATACAGAGACGTGTGCCCTTCCATTACCCATTTAAACCAATTGCCATCAGACAAAGTTGAAGCTTTTCTCTCCGACACCGTCATCTCTGTCCATCCTTACCGATTCAGTTCTGACACGTACAAATCAATGGCCAAGACCGAGTTGGAGGTAACGGTTGACAGGAAGAACAAAGACCTAAAGCACCTGGGGTTTGTGAGGATTGCTGCTATTCAAACCTTTGTGTTTGTGTCAAATCTGTATGAGTACGCAAAGCAAAATTCCGGGCCTTTGAGATCTCCTGTTGGAACGGTGGAAAACACTGTAACCACCGTTCTTGGTCCAGTATGCAACAAGTTCAAGGGCTTCCCTGATGATATCCTGGTTTTCGTTGACAAAAAGGTGGATGAAGCTACACAGAAGTTCGATGAGCATGCTCCTCCTGTTGCTAAGCAGCTCGCGAATCTAGCCAAAAGTTTGATTCAGAAAGTGGCAAACGAGGCAGGGAAAGTTGCTGGTGAAGCCCAATCTGGGGGGCCAAGAGCAGCTGTGCATTATGTGGCTACAGAGTCAAAGCATTTTGTGCTGATAAATTCAGTTAAGTTGTGGAATGGACTCGACCACTATCCACCATTCCATGCATTGGCAGAGATGGCAGTTCCCACTGCTGCTCACTGGTCAGAGAAGTACAACCATGTGATCAAGGGCATGACTCAAAAGGGTTACTGTTTCATTGGGTATCTACCGTTGATTCCCATTGATGAGATTGCGAAGGCATTTAAACAGTGTCAGGGGAACTTGAAAGGAGATGATGCAGCCTATGTTGAAAAGAGCTCGGAATCATCATCTGATTCTGATTAA 2556 0.4484 MKIKKLMPLDAEKARLNYCQNELPVEDFVLLAMRVYDALQKKYLKTLLFCVCEAVDGPMIEEYAFSFSYSDSDNQEVSMDINRTGNKKNRGAFKCNSTTEITPQQMRSSACKMIRTLVQLMRTLEKMPDERTILMKLLYYDDVTPADYEPPFFRDCTSEEAYHPWEKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDDNEEIPDDMSNGDDSMQQNEYYDTDSEVNGMDPVEDEQQRVRVKEWINCCHRDTIELTDVLSNFPDISVIMDKFIEEGVLSKIGKESYAINKDKNLEYEFAIVKEEIDGQLPKVFDRALPVEDRLYMKALYHALPMTHVSITKLQSLLEGEVNQKAARKIIDKMVRDGFVEPKGNKRLGKRVIHSELTERKFIEVQKALSATEAMDVDHCEPNSKSKLTDFRLNGNNHDVSTCGVLHSIGSDLTRMKVTSDTNYTDSGNGQNATKAKEPGNTPISRPVISRESFAIGKENGRTHGIANQGDEGDTIICSKSSQEKRSRKTSAVKEPIHQNIKRQRSEFVSLDINVDPGRSTPKKPVCPREIPRSRSERRPHPLLDEYRDVCPSITHLNQLPSDKVEAFLSDTVISVHPYRFSSDTYKSMAKTELEVTVDRKNKDLKHLGFVRIAAIQTFVFVSNLYEYAKQNSGPLRSPVGTVENTVTTVLGPVCNKFKGFPDDILVFVDKKVDEATQKFDEHAPPVAKQLANLAKSLIQKVANEAGKVAGEAQSGGPRAAVHYVATESKHFVLINSVKLWNGLDHYPPFHALAEMAVPTAAHWSEKYNHVIKGMTQKGYCFIGYLPLIPIDEIAKAFKQCQGNLKGDDAAYVEKSSESSSDSD 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01510 851 PANTHER HORMA DOMAIN-CONTAINING PROTEIN 1 1 533 - -
Vimu6g01510 851 Gene3D HORMA domain 1 237 IPR036570 -
Vimu6g01510 851 MobiDBLite consensus disorder prediction 448 466 - -
Vimu6g01510 851 Pfam HORMA domain 33 181 IPR003511 -
Vimu6g01510 851 ProSiteProfiles HORMA domain profile. 1 188 IPR003511 -
Vimu6g01510 851 SUPERFAMILY The spindle assembly checkpoint protein mad2 34 195 IPR036570 -
Vimu6g01510 851 MobiDBLite consensus disorder prediction 553 567 - -
Vimu6g01510 851 MobiDBLite consensus disorder prediction 540 567 - -
Vimu6g01510 851 MobiDBLite consensus disorder prediction 448 474 - -
Vimu6g01510 851 Pfam Rubber elongation factor protein (REF) 627 827 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01510 Vimu-Chr6 14284178 14291596 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01510 K12778 - gmx:100792473 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01510 6 14284178 14291596 Vimu11g01867 11 26641972 26643232 PCT