Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01509 TTAACTTTGACATATTATGCCAACAAACAGAGTTCTTTCTTATCTTTCCTCTCTTTTCTGCCATTTCCAACCATGTCTTCAGACATGCCGTTCCCTTCCAAAAGACAAAAAACATCGCCGGATAAAACCTCTGACTTCTTCGAATCTTTGCCGGACGATCTTCTCCTCTCTATCCTCTGCAAGCTCAGTGCCACAGCATCTTCACCCTCCGATTTTATCAATGTCTTAGTAACGTGCAAGAGACTAAACTCTCTAGGCCTTCACTCTCTCGTGTTATCAAAAGCATCCCACAAAACATTCTCAGTCAAACCCCAAAATTGGTGTGATTCTGTTCACCGTTTCCTCAAACACTGCGCCGATGCCGGAAACATTGAAGCCTGTTACACTCTCGGCATGATTCGGTTTTATTGTCTGCAAAACAGAGGGAGCGGTGCGTCGCTCATGGCGAAGGCGGCTATGAATTCTCACGCGCCGGCGCTGTATTCTCTCGCGGTGATACAGTTCAACGGAAGCGGCGGCACAAAAAACGATAAGGACCTTCGTGCCGGAGTGGCCCTATGCGCACGCGCGGCTTTTCTCGGTCACATCGACGCGCTGCGTGAGCTGGGTCATTGTTTGCAAGACGGTTACGGTGTTAAGCAGAACGTAGCGGAAGGTCGACGTTTTTTGTTGCAAGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCCGGCTCGAGCAATAAGCGTCCGTGGGTGACGTGGAACCTCCCAGTACCGCACCCGCGACTCCGTTTGGGGACCGGGACGGGTTGTCCACTGTTGAGTGATTACGGTTGCAACGTGCCGGCGTCGGAGACTCATCCGGCGAGTAAGTTTTTGTCGGAGTGGTTTGAAATTCGGAGCGGGTCACTGGGTCCGGGTATGAGACTGTGTTCACATTCGGGTTGCGGGCGACCCGAGACTAGGAGGCACGAGTTCCGGAGGTGTTCAGTTTGCGGCGTGGTGAATTATTGCTCGCGCGCGTGTCAGGCGCTTGATTGGAAATTCCGGCACAAGGCAGAATGTGCTCCCGTTGAGAGGTGGCTCAATGACGACGGGGAAGAAGTCGCCGGCGAGGACGGCGGCGGCGACGCCGTAATGATGGCAAATAGTTAG 1134 0.5335 LTLTYYANKQSSFLSFLSFLPFPTMSSDMPFPSKRQKTSPDKTSDFFESLPDDLLLSILCKLSATASSPSDFINVLVTCKRLNSLGLHSLVLSKASHKTFSVKPQNWCDSVHRFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVAEGRRFLLQANARELAAVLSGSSNKRPWVTWNLPVPHPRLRLGTGTGCPLLSDYGCNVPASETHPASKFLSEWFEIRSGSLGPGMRLCSHSGCGRPETRRHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPVERWLNDDGEEVAGEDGGGDAVMMANS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01509 377 PANTHER MYND DOMAIN-CONTAINING 33 368 IPR044508 -
Vimu6g01509 377 SUPERFAMILY F-box domain 34 105 IPR036047 GO:0005515
Vimu6g01509 377 SUPERFAMILY HIT/MYND zinc finger-like 303 353 - -
Vimu6g01509 377 SUPERFAMILY HCP-like 113 227 - -
Vimu6g01509 377 ProSiteProfiles Zinc finger MYND-type profile. 306 348 IPR002893 -
Vimu6g01509 377 Pfam MYND finger 309 348 IPR002893 -
Vimu6g01509 377 FunFam Predicted protein 296 353 - -
Vimu6g01509 377 CDD F-box_SF 48 85 - -
Vimu6g01509 377 Gene3D - 299 352 - -
Vimu6g01509 377 Gene3D Tetratricopeptide repeat domain 108 241 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01509 Vimu-Chr6 14280151 14281480 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01509 - - var:108319040 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01509 6 14280151 14281480 Vimu11g01872 11 26932115 26933483 PCT