Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01872 ATGAGAACAAGGAGAGGAGCTTGTTATTCTGGAGTAGTATCAAGGATGTGTTCGGATGTGAGGCTTGCCAACAAAAACAAGGATCTGCACATGCATATGCGTGTGCATGTCGCCGGAGACTCCTTTAGTTATAGCCGAAAAAGGCAGAAGAAGACGCCGGAAAAAACCGTTACCGATTACGATTTTTTTGAGTCTTTGCCGGATGACCTTGTAATCTCTATCTTCTGCAAGCTTAGTTCTACCGCCACTAAACCTTCCGATTTTCTCAATGTTTTAATCACGTGTAGGAGATTAAACAAGTTAGCACTACATTCGCTCGTTTTGTCCAAAGTCTCTCCCAGAGCTTTCGCTATTAGAGCCAAAGATTGGTGCGATTCGGCGCACCGTTTCCTCAAACACTGTGCGGATGCCGGAAATGTTGAAGCCTGTTTCACTTTAGGGATGATTCGGTTCTACTGCTTGCAAAACCGAGGGAACGGCGCGTCGTTAATGGCCAAGGCAGCGATAAACTCCCACGCGCGTGCTCTGTACTCGCTGGCCGTTATTCAGTTCAACGGCAGCGGCGGAACCAAAAGCGACAAGGACTTACGCGCCGGAGTGGCGCTCTGCGCCAGAGCGGCGTTTCTCGGCCACGTCGACGCGCTGCGCGAGCTCGGTCACTGCCTGCAAGACGGTTACGGCGTGCGGCAGAACATCGCCGAGGGACGGCGGTTCCTGGTACAGGCAAACGCAAGGGAGCTGGCGGCAGTTTTGTCGACGAACGCCGCCGCGCGCCACTGGCTGACGTGCAACCTTCAGCCACAGCTTCGGCAGGGGATCGGATGTCCGTTGCTCAGCGATTTCGGATGTAACGTCCCGACGCCGGAGGTGCATCCGGCAAGCCGGTTCATGGCGGAGTGGTTCGCCGCTCGCGGCGGTTCGCCCGGACAGGGGCTGAGGTTGTGTTCGCACGCGGGGTGCGGGCGGCCCGAGTCCAGGAAGCACGAGTTTCGAAGGTGTTCTGTGTGTGGCGCGGTGAACTATTGCTCACGCGCGTGCCAAGCGCTCGATTGGAAGTTCCGGCACAAGGTGGAATGCGCCCCCGTGGAGCGGTGGCTCGACGAAGACGGCGAAGACATCGGAGACGAGGATAGTGACGGCGAGGTTATGGCTATGGCGGATAGTTAG 1167 0.5638 MRTRRGACYSGVVSRMCSDVRLANKNKDLHMHMRVHVAGDSFSYSRKRQKKTPEKTVTDYDFFESLPDDLVISIFCKLSSTATKPSDFLNVLITCRRLNKLALHSLVLSKVSPRAFAIRAKDWCDSAHRFLKHCADAGNVEACFTLGMIRFYCLQNRGNGASLMAKAAINSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTNAAARHWLTCNLQPQLRQGIGCPLLSDFGCNVPTPEVHPASRFMAEWFAARGGSPGQGLRLCSHAGCGRPESRKHEFRRCSVCGAVNYCSRACQALDWKFRHKVECAPVERWLDEDGEDIGDEDSDGEVMAMADS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01872 388 SUPERFAMILY HIT/MYND zinc finger-like 314 364 - -
Vimu11g01872 388 SUPERFAMILY F-box domain 50 119 IPR036047 GO:0005515
Vimu11g01872 388 PANTHER MYND DOMAIN-CONTAINING 33 375 IPR044508 -
Vimu11g01872 388 Gene3D Tetratricopeptide repeat domain 117 304 IPR011990 GO:0005515
Vimu11g01872 388 Gene3D - 308 363 - -
Vimu11g01872 388 FunFam Predicted protein 307 364 - -
Vimu11g01872 388 Pfam MYND finger 319 359 IPR002893 -
Vimu11g01872 388 CDD F-box_SF 64 102 - -
Vimu11g01872 388 SUPERFAMILY HCP-like 119 244 - -
Vimu11g01872 388 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01872 Vimu-Chr11 26932115 26933483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01872 - - gmx:100798174 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01872 11 26932115 26933483 Vimu11g01872 11 26932115 26933483 ECH
Vimu6g01509 6 14280151 14281480 Vimu11g01872 11 26932115 26933483 PCT