Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01492 ATGTTGATATGGACATCCTTTGACGTTGAAGATAGCTCTGTAGATGACTTTTGTGGCCTTGTAGTGACAGCAGGAAAGTCTGGCAGTTTCAGGATGTCAGAGCCTGTGAAGTCTCCACCTACTAAGAAGTCTCGTAGAGATAGAAGCAGGGGCAAATCATCTGGACGATCCTGTTCAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATAGCACGACTTCCCATTGCTACATTTTTCCGCTTCCGCTCTGTCTGCCGGAAGTGGAATTCCATGCTTACTTCTCAAAGTTTTTCTCAGTATTGTACTCAAGTTACACAAGCAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCTATGTACGACCCTTCTCTGAAAAAATGGCACCACCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCCGGTGGTTTAGTTTGCTTTCTTGACATTGGTCATCGTAACTTCTTTGTTTGCAACCCACTGACTCAATCCTTCAGGGAGTTGCCAGCTCGATCAGTTAAGGTCTGGTCTCGGGTTGCTGTAGGGATGACAATTAATGGAAAGTCAGCTGGTTCAGGATACAAGATCTTATGGGTTGGTTGTGATGGAGAATATGAAGTTTACGACTCGGTCAGAAATTCTTGGATTCGTCCTGGAAACATGCCTGCAGGTATGAAGCTGCCACTGTCGCTCAACTTTAGGTCTCAAGCTGTCTCTATTGATAGCATGCTTTACTTCATGCGATCAGACCCAGAAGGGATTGTTTCTTACGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCCGAGTGTGATGGCCAGATCATGCTTGTGGGTTTGCTCACAAAGAATGCAGCTACTTGTGTATGCATATGGGAGCTGCAGAAAATGACACTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCCTGAGATCGAAACAAATGAATAGATTGGTTACTTACAACATATCAAGGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCGCGTGGGAGAAAAAGACAGTGGATAGCTTGTGGTACTGCATTTCATCCATGCCTGACAGCGGTGGCATGA 1254 0.4474 MLIWTSFDVEDSSVDDFCGLVVTAGKSGSFRMSEPVKSPPTKKSRRDRSRGKSSGRSCSTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRKWNSMLTSQSFSQYCTQVTQANPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFRELPARSVKVWSRVAVGMTINGKSAGSGYKILWVGCDGEYEVYDSVRNSWIRPGNMPAGMKLPLSLNFRSQAVSIDSMLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNISRKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01492 417 Gene3D - 68 105 - -
Vimu6g01492 417 FunFam F-box only protein 6 118 404 - -
Vimu6g01492 417 CDD F-box_AtFBW1-like 70 107 - -
Vimu6g01492 417 ProSiteProfiles F-box domain profile. 65 110 IPR001810 GO:0005515
Vimu6g01492 417 SUPERFAMILY Galactose oxidase, central domain 132 398 IPR011043 -
Vimu6g01492 417 Gene3D - 106 407 IPR015915 GO:0005515
Vimu6g01492 417 FunFam F-box only protein 6 68 107 - -
Vimu6g01492 417 MobiDBLite consensus disorder prediction 29 58 - -
Vimu6g01492 417 PANTHER BNACNNG10540D PROTEIN 43 411 - -
Vimu6g01492 417 Pfam F-box domain 68 107 IPR001810 GO:0005515
Vimu6g01492 417 SUPERFAMILY F-box domain 63 143 IPR036047 GO:0005515
Vimu6g01492 417 SMART fbox_2 71 111 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01492 Vimu-Chr6 14186952 14191657 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01492 - - gmx:100810179 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01492 6 14186952 14191657 Vimu11g01882 11 27220215 27221414 PCT