Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01882 ATGGCAGCTGGCAAGTCTGTTCCAGAGTCTGGAAGTTTCAGGAAGATGGAGCCTCTAAAGCATGCGTCTAAGAAGTCTCGAAGAGACAGGAGCCGAGGAAAATCATCTGGGAGGTCCTCCAGCGATGAAGCTATGGAACAACAAATTTGGAAAGATTTGCCGGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCAATTGCAACATTTTTCCGCTTCCGCACTGTATGCCAGCGATGGAATTCCTTGCTGAGTTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCGACAAGCGAACCCATGGTTTTACACTGTTACTCATGAACATACAAATTCTGCAGCCATGTATGACCCATCTATGAAGAAGTGGTACCATCCCACTACATCAGCACTGCCTGCAGAGTTGATAGTTTTGCCAGTGGCTTCTGCAGGGGGTTTAGTTTGCTTTTTTGACGTATATGGTCAAACTTTATATGTTTGTAACCCATTGATTCAATCCTTAAATGAGTTACCATCTTGTTCAGTAAGGGTTGGGTCTCGCGCTGCTGTAGGAATGACAGTAGATAAGAACTCAACTGGTGCTGTCTACAGGATCCTGTTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCGATAACAAAGTCATGGAGCTATCCAAGAAACATGCCGGCAGATATTAAGCTGCCGCTATCTCTCAATTTTAGGTCACAAGCGATTTCTATTGACAGCACCCTTTACTTCATGCATTCAGATCCTGAAGGGATTGTTTCCTATAATATGGCAACTGGGGTTTGGGTGCAGTACATAATCCCAGCGCCATTGCATCTGAGCGACCACACACTGGCTGAGTGTGATGGTCGGATATTGCTTGTGGGGTTGCTCACAAAGAATGCAGCCACCTGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGAAGTGCTTGGGAAACAAAGGCTTGCTCTTGTTATCATTGAGATCAAGACAAATGAATCGATTGGTTACATACAACATAGCAACTAAGGAATGGGTGAAGGTTCCTGGGTGTGTGGTTCCACGTGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTCTATCCATGCCTCAGTGCTTCGGCTTGA 1200 0.45 MAAGKSVPESGSFRKMEPLKHASKKSRRDRSRGKSSGRSSSDEAMEQQIWKDLPEDLFEPVIARLPIATFFRFRTVCQRWNSLLSSQSFSQHCAQVRQANPWFYTVTHEHTNSAAMYDPSMKKWYHPTTSALPAELIVLPVASAGGLVCFFDVYGQTLYVCNPLIQSLNELPSCSVRVGSRAAVGMTVDKNSTGAVYRILLVGCDGEYEIYDSITKSWSYPRNMPADIKLPLSLNFRSQAISIDSTLYFMHSDPEGIVSYNMATGVWVQYIIPAPLHLSDHTLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMKCLGNKGLLLLSLRSRQMNRLVTYNIATKEWVKVPGCVVPRGRKRQWIAHGTAFYPCLSASA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01882 399 Pfam F-box domain 50 89 IPR001810 GO:0005515
Vimu11g01882 399 SUPERFAMILY Galactose oxidase, central domain 114 380 IPR011043 -
Vimu11g01882 399 SMART fbox_2 53 93 IPR001810 GO:0005515
Vimu11g01882 399 SUPERFAMILY F-box domain 44 126 IPR036047 GO:0005515
Vimu11g01882 399 Gene3D - 87 387 IPR015915 GO:0005515
Vimu11g01882 399 PANTHER BNACNNG10540D PROTEIN 21 375 - -
Vimu11g01882 399 FunFam F-box only protein 6 100 386 - -
Vimu11g01882 399 ProSiteProfiles F-box domain profile. 47 92 IPR001810 GO:0005515
Vimu11g01882 399 Gene3D - 50 86 - -
Vimu11g01882 399 MobiDBLite consensus disorder prediction 1 46 - -
Vimu11g01882 399 FunFam F-box only protein 6 50 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01882 Vimu-Chr11 27220215 27221414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01882 - - gmx:100775721 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01882 11 27220215 27221414 Vimu11g01882 11 27220215 27221414 ECH
Vimu6g01492 6 14186952 14191657 Vimu11g01882 11 27220215 27221414 PCT