Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01481 ATGGCCATGGAGAGTGTGTTTCCGAATCCGATAGAGTGTCTGGGAAAAGGGTTTGATTTCACATGTGATTTCCGATTGAAGTTTGCCAAAGGAAAAGGAAGTAGAAGATTGGTGGTTGTTGATGAAGAGAACAGGAGGGACATTACTGTTCCTGGTACTGCTGCTACCATTCCCAATGTTTCCCAGGATATTCGCTGTGACAAGGGGGATCGCCTTCGTTTCACATCTGATGTTCTTCAATTCAATCAGATGTCCGAGCTGCTAAATCAAAAGTCGGCAATACAGGGAAAAATTCCTTCCGGCTATTTTAATGCTCTTTTTGATCTGACTGGTGATTGGTATCGTGATGCTCATAACGTCAAGTATCTTGCTTTTGATGGTTATTTCATTTCCCTGTTCTATCTGCACCTTACTGCTTCACACCTCACACTGCAAGAGGAAGTGAAAAAGTCTGTTCCAGCTCAGTGGGACCCAGCTTCATTAACCAGGTTCATTCAAACATATGGAACACACATAATAACAGGTATGGCTGTTGGAGGTCAAGATGTAATATGTGTCAAACAAAAGCATTCTTCAAAGGTTTCATCTGGTGATCTAAGAAGAAATTTAGAGAATCTAGGAGATTTTTTGTTTCAAGATTTAAGAAGCCCTTCTCAACAACATACAAACACCTCCGCAGAAGCCAAACAAAAAGTTCCTGAGGTCTTCAATCAAGTGATGCAATCAAACACAACGCAGTTCACCAGCATTTCAGAAACTTCAAACAAGGACGGCCTCACTATCATCTGTTCAAAAAGAGGAGGAGATGTGTTCAAGCATGGTCACTCAAATTGGCTCCAGACAGTGGCTTCTAGTCCTGAAGCTATCCTCTTCAAGTTTGTGCCTATTTCCTCACTTCTCACAGGAATTCCTGGAAGTGGCTATCTTACTCATGCAATCAATTTGTATTTACGCTATAAGCCCCTTCCCGAAGATTTACAATGCTTTTTGGAGTTTCAAATTCCAAGGCAATGGGCACCCATGTTTTATGAGCTACCTCTGAGGCATCAAAGGAAAAAGAGTACTTCCCCTTCCCTGCAATTTGGTTTCATGTCTCCCAAGCTTCATGTCAGTTCTACACAGGTAGTGAGTGAAGAAAAGCCTGTGGTAGGCCTCCGTCTGTACTTGGAAGGAAGAAAATGTAATAGACTTGCAATACATGTACACCATCTTTCAAGCCTCCCAAAGACAATGATCCACTCTTCAGGCGCATCTTTGTGGCGAGGATCTGATGATAATGAATACTGTGACACCTTTCTGGAACCAATAAGGTGGAAGGGATTTGCAAACGTGTGCACTGCAGTGGTTAAACATGACCCTAACTGGTTGCAAGAATCAGGTGGGGGTGTTTACATTGTAACCGGTGCACAGCTCATTAGCAAAGGAAATTGGCCAAAAAATGTGCTTCACTTGCGCCTCCAATATACCCACATAGCCAATTGCAGTATCAGGAAGTCAGATTGGGGTGGTGCACCTGAGGCTTCAAGAAAATCATCTTTCCTCACAAATTTAAGCACGACATTTTCATTCACACAGCAAAGTGTGACTACTTCTCCTCAGAAGCAGGCTCCCACTTCACTTGACTCTGGTGTTTATCCAGATGGTCCACCTGTGCCTGTTCGTTCTGGAAAACTGCTTAAATACGTGGATACAAGCGAGGTTCTGAGGGGTCCACATGATGCTCCTGGACATTGGTTGGTAACAGCTGCTAAGCTTGTGACCGAGGGTGGTAAGATTGGATTGCAGGTTAAGTTTGCACTGTTAGACTACTAG 1812 0.4338 MAMESVFPNPIECLGKGFDFTCDFRLKFAKGKGSRRLVVVDEENRRDITVPGTAATIPNVSQDIRCDKGDRLRFTSDVLQFNQMSELLNQKSAIQGKIPSGYFNALFDLTGDWYRDAHNVKYLAFDGYFISLFYLHLTASHLTLQEEVKKSVPAQWDPASLTRFIQTYGTHIITGMAVGGQDVICVKQKHSSKVSSGDLRRNLENLGDFLFQDLRSPSQQHTNTSAEAKQKVPEVFNQVMQSNTTQFTSISETSNKDGLTIICSKRGGDVFKHGHSNWLQTVASSPEAILFKFVPISSLLTGIPGSGYLTHAINLYLRYKPLPEDLQCFLEFQIPRQWAPMFYELPLRHQRKKSTSPSLQFGFMSPKLHVSSTQVVSEEKPVVGLRLYLEGRKCNRLAIHVHHLSSLPKTMIHSSGASLWRGSDDNEYCDTFLEPIRWKGFANVCTAVVKHDPNWLQESGGGVYIVTGAQLISKGNWPKNVLHLRLQYTHIANCSIRKSDWGGAPEASRKSSFLTNLSTTFSFTQQSVTTSPQKQAPTSLDSGVYPDGPPVPVRSGKLLKYVDTSEVLRGPHDAPGHWLVTAAKLVTEGGKIGLQVKFALLDY 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01481 603 MobiDBLite consensus disorder prediction 528 547 - -
Vimu6g01481 603 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 5 603 IPR044663 GO:0006952|GO:0012501|GO:2000031
Vimu6g01481 603 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 330 IPR020864 -
Vimu6g01481 603 SMART MACPF_8 120 318 IPR020864 -
Vimu6g01481 603 Pfam MAC/Perforin domain 103 316 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01481 Vimu-Chr6 14098828 14103767 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01481 - - gmx:100818022 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01481 6 14098828 14103767 Vimu11g01907 11 28580606 28585155 PCT