Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01907 ATGGCGGGGGAGAAGAGTGTTGAGATGGTGGCATTGGAGTGTCTGGGGAAAGGGTTCGATATGGCCAGTGATTTTCGGTTGAGGTTTGCAAAGGGGATTCGTGGAGAGAGGTTAGTGGTGCTTGATGAACATAACAAGAGGGATATCTTGATTCCTGGAACTGGAGGAGTTACCATTAAAGCGGTTTCTGAGAATATTCGGTGTGATAAAGGGGACAGAATACGCTTCAAGTCTGATGTACTTGAATTCAACCAGATGTCTGAGTTGCTTAATCAGAAATCGACAGTGCAAGGGAAAGTTCCTTCTGGGTATTTTAATGCGCTTTTCGATTTGACTGGTGATTGGTTTCGTGATGCTGCTGACATAAAATACCTTGCTTTTGATGGTTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCTCCACTCATTCTTCAAGAAGAGGTAAAGAAGTCTGTTCCGGCTCAGTGGGATCCAGCTTCGTTGTCTAGGTTCATACAGACATATGGTACACACATAATAGTGGGTATGGCTGTAGGAGGTCAAGATGTAATCTGTGTCAAACAAAGGCATTCATCAAAAATTCCTCCTGGTGATCTAAGGAGACATTTGGAGGATCTTGGAGATTTTCTTTTCTCAGATGTGAGAAGCCCTTCTTTAGTACAGGGGAAGACCGCAGATGGAAAACAGAAGGTCCCTGAGGTCTTTAACCGTGTGATGCAATCAAACACAATGCAGTTCACTAGTATTTCAGAAACATCAAGCAAGGATGGACTCACTATTATTTGTTCAAAAAGAGGAGGAGATATGTTCAAACACAGTCACTCAAATTGGCTTCAGACGGTGCCTTCTAACCCTGATGCAATCCTCTTCAAGTTTGTTCCTATTTCCTCACTTCTGACAGGAATTCCTGGAAGTGGATATCTTAGTCATGCAATCAATCTGTATCTACGCTACAAGCCTTCTCTTGATGATTTACAATACTTTTTGGAGTTTCAAATTCCGAGGCAATGGGCACCCATGTTTTGTGAGCTGCCACTCAGGCATCAGCGGAGAAAGACTGCTTCCCCTTCACTGCAATTTAGTTTCATGGGTCCGAAGCTTCATATCATCTCTACACAGGATCAGGATGTAAATCTCGTTAAGAAATCTTTTGATGATTCTCAAGATTCAGAGGCCAAACATGGCATATGGGATGAAAGAGGTGATATCTTAAAGTACGTGGTAAGTGAACAAAAACCTGTGGTTGGCATGCGCTTGTACTTGGAGGGAAGGAAATGTGATAGACTTGCTTTGCATATACATCATCTTTCTAGCCTTCCAAATAAAATGGTCCTCTCTTCAAGAAGCTCAACCTCGAGCATGCCATCTATGTGGCGAGGATCTGACGATAATGATTCAAGCGATCAATTTCTGGAACGAATAAGATGGAAGAGATTCTCAAATGTGTGCACAGCAGTGGTTAAACATGACCCTAACTGGTTGAATAGTTCCGGAGGTGTTTATATTGTTACAGGTGCACAGCTCCTTAGCAAAGGAAATTGGCCAAGGAATGTGCTTCACCTGCGTCTTCTCTTCACTCATATACCCAATTGCAGTATCCGGAAGTTGGAGTGGTCTGCTGCTCCAGAGGCTTCAAGAAAAACATCTTTTCTCACAAATTTGAGTACAACATTTTCATTCACACAGCATGGCAACACTGGTCCTCCAAAGCAGGCCCCAACTGCTCTCAATTCTGGTGTTTATCCAGATGGTCCACCTGTGCCAGTTCGCTCTGGTAAACTTCTTAAATACGTGGAGACAGCTGAGGTGGTGCGAGGTCCACATGATGCTCCTGGCCATTGGTTGGTAACTGCTGCTAAGCTTGTGACTGATGGTGGTAAGATTGGATTACAGGTGAAGTTTGCATTACTAGATTATTGGTGA 1929 0.4329 MAGEKSVEMVALECLGKGFDMASDFRLRFAKGIRGERLVVLDEHNKRDILIPGTGGVTIKAVSENIRCDKGDRIRFKSDVLEFNQMSELLNQKSTVQGKVPSGYFNALFDLTGDWFRDAADIKYLAFDGYFISLYYLHLTASPLILQEEVKKSVPAQWDPASLSRFIQTYGTHIIVGMAVGGQDVICVKQRHSSKIPPGDLRRHLEDLGDFLFSDVRSPSLVQGKTADGKQKVPEVFNRVMQSNTMQFTSISETSSKDGLTIICSKRGGDMFKHSHSNWLQTVPSNPDAILFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSLDDLQYFLEFQIPRQWAPMFCELPLRHQRRKTASPSLQFSFMGPKLHIISTQDQDVNLVKKSFDDSQDSEAKHGIWDERGDILKYVVSEQKPVVGMRLYLEGRKCDRLALHIHHLSSLPNKMVLSSRSSTSSMPSMWRGSDDNDSSDQFLERIRWKRFSNVCTAVVKHDPNWLNSSGGVYIVTGAQLLSKGNWPRNVLHLRLLFTHIPNCSIRKLEWSAAPEASRKTSFLTNLSTTFSFTQHGNTGPPKQAPTALNSGVYPDGPPVPVRSGKLLKYVETAEVVRGPHDAPGHWLVTAAKLVTDGGKIGLQVKFALLDYW 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01907 642 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 331 IPR020864 -
Vimu11g01907 642 MobiDBLite consensus disorder prediction 563 582 - -
Vimu11g01907 642 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 6 375 IPR044663 GO:0006952|GO:0012501|GO:2000031
Vimu11g01907 642 SMART MACPF_8 122 319 IPR020864 -
Vimu11g01907 642 Pfam MAC/Perforin domain 105 317 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01907 Vimu-Chr11 28580606 28585155 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01907 - - gmx:100781070 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01907 11 28580606 28585155 Vimu11g01907 11 28580606 28585155 ECH
Vimu6g01481 6 14098828 14103767 Vimu11g01907 11 28580606 28585155 PCT