Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01194 ATGGATTGTTGGTCATCTCCTCTACCTCTTCATGATGAATTCGAGAAGCTTGTCATTCGAATGAACCCTCCCAGAGTTGCTGTGGATAACGTTTCGAGCAGGACAGACACTGTGATAAAGGTTGATAGCGCAAACAGACGCGGGAGTTTGCTGGAGGTGGTTCAGGTTCTCACTGACATGAATCTCAGTGTTAGAAGAGCTTACATTTCCTCTGATGGAGAATGGTTCATGGATGTTTTTCATGTCACTGATCAGAATGGGAAAAAGTTTGTGCAAGATGATGTAGCTGACCGAATTCAACAGTCGCTGGGTCCAAGAGCCTCCAGTTTCCGATCCTTGAGAAGATCTGTTGGGGTTCAAGCTGAAGCAGAACATACAACCATTGAATTAACCGGAAGAGACAGGCCAGGGTTGCTTTCGGAAGTTTTTGCTGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTCTGGACACACAATTCAAGAATGGCATCCGTTGTTTACATCACAGATGAGGAGACAGGATTGTCCATCGACAACCCGGATCGCCTTGCTAAGATTAAGCAGCTTCTACTGTATGTGCTGAAAGGAGACATAGATAAGAAGAGTGCCAACACTGCTGTTTCTGTTGATTCTACTCACAAGGATAGGAGGCTGCATCAGTTGATGTATGCCGACCGTGATTATGACATAGACGATGGAGATTCTGGATCAACAAGTGACAGGAACAAGCTCCTTGTAACTGTTGATGATTGCATAGATAAGGGATATACTGTTGTGAACTTGAGGTGTCCAGATAGACCTAAATTACTGTTTGATACTGTATGCACCCTCACAGACATGCAGTATGTTGTGTACCATGGAACTGTCATTGCCGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTGGATGGTTGTCCTATCAGTTCTGAAGCAGAAAGACAAAGAGTGATTCATTGTTTGGAGGCCGCTATTAGGAGGCGAACTTCTGAGGGTATAAAGCTAGAACTTTGTGGAGAGGACAGGGTTGGGCTTCTGTCTGATGTAACCCGCATCTTTAGAGAAAATGGCCTTTCAGTCAACCGTGCTGAAGTTACAACCAGGGGCACTCAAGCTGTGAATGTTTTCTATGTGACTGATGTGACTGGAAATCCAGTTAAGAGTGAAACAATTGAAGCAGTTAGAAAAGAGATTGGTTTGGCCATACTGCAGGTCAAAGATGATGTCTGCTCAAAACCTCAACCCCATGAGAGAGGAAAATTCTCTCTGTCTGGTCTCTTTCGATCAAGCTCTGAGAAGTTTCTTTATAATTTGGGTCTAATGAAGTCTTATTCTTGA 1353 0.439 MDCWSSPLPLHDEFEKLVIRMNPPRVAVDNVSSRTDTVIKVDSANRRGSLLEVVQVLTDMNLSVRRAYISSDGEWFMDVFHVTDQNGKKFVQDDVADRIQQSLGPRASSFRSLRRSVGVQAEAEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEETGLSIDNPDRLAKIKQLLLYVLKGDIDKKSANTAVSVDSTHKDRRLHQLMYADRDYDIDDGDSGSTSDRNKLLVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHVDGCPISSEAERQRVIHCLEAAIRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRGTQAVNVFYVTDVTGNPVKSETIEAVRKEIGLAILQVKDDVCSKPQPHERGKFSLSGLFRSSSEKFLYNLGLMKSYS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01194 450 CDD ACT_ACR_4 337 408 - -
Vimu6g01194 450 ProSiteProfiles ACT domain profile. 38 118 IPR002912 -
Vimu6g01194 450 Gene3D - 337 411 - -
Vimu6g01194 450 SUPERFAMILY ACT-like 335 404 IPR045865 -
Vimu6g01194 450 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Vimu6g01194 450 CDD ACT_ACR_2 126 199 - -
Vimu6g01194 450 Gene3D - 125 196 - -
Vimu6g01194 450 SUPERFAMILY ACT-like 124 193 IPR045865 -
Vimu6g01194 450 CDD ACT_ACR_3 259 333 - -
Vimu6g01194 450 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 11 411 IPR040217 -
Vimu6g01194 450 Pfam ACT domain 126 175 IPR002912 -
Vimu6g01194 450 Pfam ACT domain 37 86 IPR002912 -
Vimu6g01194 450 Pfam ACT domain 341 402 IPR002912 -
Vimu6g01194 450 SUPERFAMILY ACT-like 35 104 IPR045865 -
Vimu6g01194 450 ProSiteProfiles ACT domain profile. 339 417 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01194 Vimu-Chr6 12174151 12176628 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01194 - - gmx:100798999 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01194 6 12174151 12176628 Vimu6g01194 6 12174151 12176628 ECH
Vimu6g01194 6 12174151 12176628 Vimu11g00082 11 755086 756593 ECH