Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00082 ATGGATGTTTTTCATTCGCTTGGCGGAATTCACAATGGGAGTGCCAATGTCTTGAACGGTCTCACTACCCTTGAATTAACGGGCACAGACCGCGTTGGTCTTCTTTCGGAGGTGTTTGCTGTACTAGCTGAGCAGCAATGTGACGTGGTTAATGCTAAGGTTTGGACTCACAATGGTCGGATTGCCTCTTTAATCTATGTGAAAGACAGCAGTTCTGGGACTCTTATCGAGGACTCTCAGAGAATTAAAACTATTGAAGCACAAAGAAGGCTGCACCAGATGATGTACGCTGATCGTGATTACCAAAGGAATCCCATTTTCAAGTTTACTTCTGATATCCCAGTAGTAACCGTTCAAAATTGGGCCGAAAGAGGTTATTCGGTTGTCAATGTGCAGTGCAAGGATCGAATTAAACTTTTGTTTGATGTGGTCTGTAATTTGACTGACATGGAATATGTTGTGTTCCATGGAACTGCCAAGACAACAGTTGACCAAGCGTATCTGGGTGTTATGCTAGAGTTATGCACGGAGGATAGACAGGGGCTTCTAGCAGAAGTGATGAGAACTTTTCGAGAGAATGGGCTTAATGTGACAAGGGCGGAGATATCTACCATTGGGGACAGGACATCAAATGTGTTTTATGTAACAGATGCGATCGGATACCCTGCGGATCCAAAAATGATCGAATCTGTTAGGCAGAAAGTTGGATTGAGCCATTTAAAAGTGAAGGAGTTAGCATTGGTATGCGACGAGAAGGCAGAAAGGGAAGATGAAGCAGTTGGGGTTGGTGGGGCAGTGTTGCTGTGTCTGGGGAGCCTCGTGAGAAGGAATCTATACAATTTGGGTTTGATAAAATCATGCTCTTAA 867 0.4418 MDVFHSLGGIHNGSANVLNGLTTLELTGTDRVGLLSEVFAVLAEQQCDVVNAKVWTHNGRIASLIYVKDSSSGTLIEDSQRIKTIEAQRRLHQMMYADRDYQRNPIFKFTSDIPVVTVQNWAERGYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHGTAKTTVDQAYLGVMLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTIGDRTSNVFYVTDAIGYPADPKMIESVRQKVGLSHLKVKELALVCDEKAEREDEAVGVGGAVLLCLGSLVRRNLYNLGLIKSCS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00082 288 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 169 244 IPR040217 -
Vimu11g00082 288 SUPERFAMILY ACT-like 170 227 IPR045865 -
Vimu11g00082 288 SUPERFAMILY ACT-like 19 91 IPR045865 -
Vimu11g00082 288 Gene3D - 169 243 - -
Vimu11g00082 288 Pfam ACT domain 22 70 IPR002912 -
Vimu11g00082 288 Pfam ACT domain 171 222 IPR002912 -
Vimu11g00082 288 ProSiteProfiles ACT domain profile. 23 106 IPR002912 -
Vimu11g00082 288 Gene3D - 21 95 - -
Vimu11g00082 288 ProSiteProfiles ACT domain profile. 171 251 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00082 Vimu-Chr11 755086 756593 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00082 - - gmx:100794729 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01194 6 12174151 12176628 Vimu11g00082 11 755086 756593 ECH
Vimu11g00082 11 755086 756593 Vimu11g00082 11 755086 756593 ECH