Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00568 ATGAATGTACAAGTGGAGAAGAAGTCGCTTTCTGAAGAAAAATCTGGCACGGTTCAATCTGTCATAAGGTGGTTGGTGCTGGTTGTCTTTGTGGGATGGATTTTCGTATGGATAATGACTCCCACAAACACTTACCAGCAAAAATGGAAGCATCGCCTTCGAGCAAAGACTGAATCTATTTTTGATACACAAGGTGCAAATCTTCTGGTTTACACTTCTCCAATCTTGTTCATAGCTGCTTTGGGATGTGTCTACATTCACATAGCCAAAAAAGGAAAGGATTCCGACATGGAAAAAAGAAAGAAACACCAGGTATCCATTTGGAAGCGTTTGGTTCTTCTGAGAGGGCCTCTTGGCATAGTTTCTGCGACAGAACTGGCTTTCTTGTCTATGTTTATAGTTCTCCTCTTATGGTCCTTTTCAATCTATCTGCACAATGGCTTTGCCAAAATCACCCACAAATCAGCAGCAAAACAAGGTGTAAAACTCTGGGAGAAGAGACTAGCTAGTGCAGCTTTGAAGTTGGGTTTGGTTGGAAACATATGTTTGGCATTCTTGTTTTTCCCAGTTGTTCGTAGTTCCTCAGTGCTACCACTGATTGGACTAACACCAGAGAGTTGCATCAAATACCATATTTGGCTAGGAAACATTGCCATGACCCTTTTCACAGCTCATGGTATTCTTTTCATCATCTATTGGGCAGTTACTCATCAACTTTCAAAGGTTCATCTTCATATATCCTTCCTACAATATATCTCTTTCCGTTGGTGCCTTTTGAAATACATGAATGTGTTTTATGTTGGAGCTATGAAGCAGATGTTGGAATGGAAAAGAAAAGGGATTTCAAATGTGGGGGGAGAGGTAGCTTTGGTTGCTGGTTTGTTGATGTGGATTGCAACAATCCCTCGTATTAGGCGTAAAGCTTTTGAGGTCTTCTTCTACACTCACTACCTCTACATCCTCTTCATTCTCTTCTTCATCTTTCACGTTGGCTTCTCCTATGCATGCACCATGCTCCCAGCTTTCTACCTCTTCTTAGTTGATCGCTACCTAAGGTTTCTGCAATCAAGATACCAAGTTCCTTTGATTTCTGCTCGTCTTTTGCCTTGTCAAACTCTACAACTCAACTTCTCCAAGAGCCATGGTTTAACTTATAGCCCCACAAGTATTATGTTCATAAATATACCAAGCATATCCAAGCTACAATGGCATCCATTTACCATTACTTCTAATAGTAATTTGGAGCCAGAAGTGTTGAGTGTTGTCATCAAAGGTGAAGGAACTTGGTCCCAGAAGCTCTACCAAATGCTTTCAACCCCTTCAGCAATTGATCATCTCAGTGTCTCTGTTGAAGGTCCATATGGACCTGCATCAACCAATTATCTAAGGTATGATACTCTTGTGATGGTTAGTGGAGGGAGTGGAATGACTCCCTTTATCTCCATCATTCGGGAGCTACTGTATTTGAGCACAGCATTCAGATGCAGAACCCCAAAAGTTATCCTAATCTGTGCATTCAAGAACTCTTCCTATCTCTCAATGCTGGATCTGATCCTTCCAAATTCTGGCACCCCTTTTGATATTTCTAACATGCAACTACAAATTGAGGCCTACATCACAAGAGAGGAGGAGCATGTATTGGAAACTCAAATCCACGTTAAAGATATAAGGTTCAAGCCCAAGGCAACAGATGCACCCATATCTGCTATTTTAGGTCCTAACAGTTGGCTTTGGCTGTGTGCTATAATCTCATCCTCGTTCATTATTTTCCTTGTCCTAATTGGGATCATTACACGATACATCATTTTTCCAGTAGACTACAATTCTAATAAAACATTTTCACAATCTTTGGGGTCATTTCTCAGCATGCTAGCAATATGTGTGTCCATAACAATGACTGCTAGTGTAGCTGTTCTTTGGAACAAGAAACACAACGATGTAGAAGCAAAGCAGATTCAGAACTTAGAAGTGGAAAGCCTACCCCACCAATCCCTTGTTCAAGCTACAAAAGTGCATTTTGGTGTAAGACCTGATCTGAGAAGAATGCTAATGGAAGTTGAAGGAACAAGAGTTGGAGTTTTTGTTTCGGGACCAAAGAAGATGAAGCAGGAGGTTGCAGGCATTTGCTCATCTGGTTTAGCAGAAAATCTGCATTTTGAATCTTATAGCTTTAGC 2175 0.4087 MNVQVEKKSLSEEKSGTVQSVIRWLVLVVFVGWIFVWIMTPTNTYQQKWKHRLRAKTESIFDTQGANLLVYTSPILFIAALGCVYIHIAKKGKDSDMEKRKKHQVSIWKRLVLLRGPLGIVSATELAFLSMFIVLLLWSFSIYLHNGFAKITHKSAAKQGVKLWEKRLASAALKLGLVGNICLAFLFFPVVRSSSVLPLIGLTPESCIKYHIWLGNIAMTLFTAHGILFIIYWAVTHQLSKVHLHISFLQYISFRWCLLKYMNVFYVGAMKQMLEWKRKGISNVGGEVALVAGLLMWIATIPRIRRKAFEVFFYTHYLYILFILFFIFHVGFSYACTMLPAFYLFLVDRYLRFLQSRYQVPLISARLLPCQTLQLNFSKSHGLTYSPTSIMFINIPSISKLQWHPFTITSNSNLEPEVLSVVIKGEGTWSQKLYQMLSTPSAIDHLSVSVEGPYGPASTNYLRYDTLVMVSGGSGMTPFISIIRELLYLSTAFRCRTPKVILICAFKNSSYLSMLDLILPNSGTPFDISNMQLQIEAYITREEEHVLETQIHVKDIRFKPKATDAPISAILGPNSWLWLCAIISSSFIIFLVLIGIITRYIIFPVDYNSNKTFSQSLGSFLSMLAICVSITMTASVAVLWNKKHNDVEAKQIQNLEVESLPHQSLVQATKVHFGVRPDLRRMLMEVEGTRVGVFVSGPKKMKQEVAGICSSGLAENLHFESYSFS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00568 725 SFLD Ferric Reductase Domain 41 724 - -
Vimu6g00568 725 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 448 519 IPR039261 -
Vimu6g00568 725 FunFam Ferric reduction oxidase 3 453 570 - -
Vimu6g00568 725 Pfam Ferric reductase like transmembrane component 175 326 IPR013130 -
Vimu6g00568 725 Gene3D - 448 575 IPR039261 -
Vimu6g00568 725 PANTHER NADPH OXIDASE 23 724 - -
Vimu6g00568 725 Pfam FAD-binding domain 359 458 IPR013112 GO:0016491
Vimu6g00568 725 Gene3D - 609 724 IPR039261 -
Vimu6g00568 725 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 355 460 IPR017927 GO:0016491
Vimu6g00568 725 Pfam Ferric reductase NAD binding domain 464 710 IPR013121 GO:0016491
Vimu6g00568 725 SFLD Ferric reductase subgroup (FRE) 18 724 - -
Vimu6g00568 725 CDD NOX_Duox_like_FAD_NADP 362 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00568 Vimu-Chr6 6886353 6889875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00568 9 725 Miscellaneous Gene Families AT1G01580 53.629 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00568 K00521 - gmx:100814642 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00568 6 6886353 6889875 Vimu6g00568 6 6886353 6889875 ECH
Vimu6g00568 6 6886353 6889875 Vimu9g00265 9 3208849 3213089 PCT