Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00563 ATGGGTTTCAATTTGATTCTATGGTATCACCCCAATCTGGTTCTCGCTGTTCTGCTACTCTTTTCCTGTTCCTTTGGTCTTTTCTCTGCAAATGATGAAGTGGGCACGGGTCAAGGTGAAACCTTTACTGTTTCAAGCTTCAGTTACCCTGAGACTAGGCTCAGACCCTTTGATTTGCGCTACATCAGAGTTGACTTGCCGCCGTGGTTTTCTGCACTGTCTATAGCATTGAAGTCAGATGTAGACATTGATATCTCAAGAATTGAAAGGGTTCCAATACGCACATTGCCAATAATATGCTTTAGAGATGGAAGTCCTCCACTACCAGATGCCTTAAACACATCTCTGAAACATTCAGCCACTTCTGGAATAAATGGTCTAGATGTGGAGCAGTGCTTTCCCATGCAGAAAAATATCACTATGAAACTGACAAACAATCAGATATCTCCAGGTGTTTGGTATATTGGTCTTTTCAATGGGATTGGACCTACAAGGACACAATCAAAGATGATTATCCGTGGTCCATCATATTCCTTTATTGCCAATATAAGTGTGGAAGCATGCACAAATTCAATGATGAGGGGGGATTTCTGTAACAATACAGTTTATCCACTTTCGTGTGAAGCATCTGATGTCTCTAATGCTTTGGAAACTAAAGTGAACAAGTCAGTGTTGGAAAATTTGGTGACCTGCAAAAGTAATTCTGAAGCATTTTGTGTTCATGAAGGTGTGCCAAACTTCTTCTCCCTGGACATAATGAATGTGGCAGAAGAAATTATCATTACGGCAACAAATATCAGATTCAATGTTACTTCATCAAATGATGTTAGTTTAATGTGTTTTTTCCGCCATGGTGCTATGCCTTCTGTGAATTCAAATGATTATTCCATTGATATAGCTAAAAGTCCCCTGGTTATTCATTCACCATTGATTGGCCGTTGGTATATTAGTATAGTGCCACTCAATCTTACAAAAACTCAGGTTAGCAATGTAAGAGTTTGCTATTCGGTGGAATCACAAGTGCTTCAATGTCCACTTGGAAAAGCTGGACCAAATTGTATAATGGAGAGCTACTTGCTTCAGACATTTGTAAGGAGAGGTTCAACCCCTTTTGAATCGTATTATTTACCGGTTGGTGGAGCATCTTATGATTCTGCCAATTTCCCTCTTGAGCCACTTTTAAAGAACTCATCGTACATTGGAGAATCTGATAACATTTGGACTTACTTTCTTTTGGACATTCCTCGTGGTGCTGCTGGAGGAAATATTCACATACAGCTATCCTCAGATACAAAGATTGGTTATGAAGTGTATGCTAGATTTGGTGGTTTACCATCTCTAGATATCTGGGACTATTATTATGCTAACAAGACCATGAGAAGTGACCCATCTATGTTTTTCACGCTGTATGACTCAAGTGATACCAAAGTTAACTTTTATATTATGTATGCTAGAGAAGGAACTTGGGGCTTTGGTCTAAGACATCTTAATAGCAACGGTGATTCCATAAAAGGACTAAATATCATGTCCATTTCACTTGAGCGATGCCCAAAACGATGTTCCTCTCATGGAGACTGTAAATTTTCGTTTGACGCTAGTGGACTAACGTCTTACAGCTTCTGCTCCTGTGATCGAAACCATGGAGGCTTTGACTGCAGCATTGAGATTGTAACACATCAAGGGCATGTTCGACAATCAATTTTTCTCATTGTATCAAATGCTGCTGCCATACTTCCTGCCTATTGGGCCCTTCGGAAGAAGGCATTAGCAGAATGGGTTTTATACACATCCAGTGGGATTTCAAGTGGACTATATCATGCGTGTGATGTGGGCACTTGGTGTGCGTTGAGCTATAATGTCTTACAGTTCATGGACTTTTGGCTCTCATTCATGGCTGTGATTAGCACTTTTCTTTATCTAACTACCATTGATGAAGTATTTAAGAGGGCAATCCACACAGCTGTTGCTATCCTTACTGCTCTAATGGCTGCAACAAAAGCAACCAGGTCTTCCAATGTTATTCTTGTGATTGTGATTGGTGCTCTTGGTTTGTTTGTTGGATGGTTGATAGAAATCTCAACAAAGTATCGGTCCCTCTCCTTTCCAATTGGAATCTCATTTAACTTCTCTCACTGTTTCCAAACTATAAAGCGATGGCTCTATAATCTTGTCAAGACACTTTTGAGACGGTACCACTTGGCATTTGCCTTGGCTGGTTTTACTGCATTGGCCATGGCAGCAATAAGCTGGACACTTGAAACCAGTGAATCCTACTGGTTTTGGCACAGCATTTGGCATATTACAATATACACATCTTCTTTCTTCTTCCTTTGTTCAAAAGCAAACATTGAGGACAGTGAGGCAACACATCCTACAGATGGAGACTATGAACTGACTCATCAGGATTCACTTCCAAGAAGTGGTTAG 2427 0.4026 MGFNLILWYHPNLVLAVLLLFSCSFGLFSANDEVGTGQGETFTVSSFSYPETRLRPFDLRYIRVDLPPWFSALSIALKSDVDIDISRIERVPIRTLPIICFRDGSPPLPDALNTSLKHSATSGINGLDVEQCFPMQKNITMKLTNNQISPGVWYIGLFNGIGPTRTQSKMIIRGPSYSFIANISVEACTNSMMRGDFCNNTVYPLSCEASDVSNALETKVNKSVLENLVTCKSNSEAFCVHEGVPNFFSLDIMNVAEEIIITATNIRFNVTSSNDVSLMCFFRHGAMPSVNSNDYSIDIAKSPLVIHSPLIGRWYISIVPLNLTKTQVSNVRVCYSVESQVLQCPLGKAGPNCIMESYLLQTFVRRGSTPFESYYLPVGGASYDSANFPLEPLLKNSSYIGESDNIWTYFLLDIPRGAAGGNIHIQLSSDTKIGYEVYARFGGLPSLDIWDYYYANKTMRSDPSMFFTLYDSSDTKVNFYIMYAREGTWGFGLRHLNSNGDSIKGLNIMSISLERCPKRCSSHGDCKFSFDASGLTSYSFCSCDRNHGGFDCSIEIVTHQGHVRQSIFLIVSNAAAILPAYWALRKKALAEWVLYTSSGISSGLYHACDVGTWCALSYNVLQFMDFWLSFMAVISTFLYLTTIDEVFKRAIHTAVAILTALMAATKATRSSNVILVIVIGALGLFVGWLIEISTKYRSLSFPIGISFNFSHCFQTIKRWLYNLVKTLLRRYHLAFALAGFTALAMAAISWTLETSESYWFWHSIWHITIYTSSFFFLCSKANIEDSEATHPTDGDYELTHQDSLPRSG 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00563 808 ProSitePatterns EGF-like domain signature 1. 541 552 IPR000742 -
Vimu6g00563 808 Pfam Protein of unknown function (DUF3522) 562 767 IPR021910 GO:0016020
Vimu6g00563 808 PANTHER FIVE-SPAN TRANSMEMBRANE PROTEIN M83 10 806 IPR021910 GO:0016020
Vimu6g00563 808 Gene3D - 379 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00563 Vimu-Chr6 6813259 6822051 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00563 - - gmx:100778959 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00563 6 6813259 6822051 Vimu6g00563 6 6813259 6822051 ECH
Vimu6g00563 6 6813259 6822051 Vimu9g00276 9 3342520 3349715 PCT