Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00532 ATGGATAAAGCATCCAACTTTGATGAAAATTCTGAGGTGGGTTATCACCCTTCACCTTCCAATACTACTGCTTTTTCCCCAATGAGTCGAGATTCCTTTGCATATTGCCAAACTTGGACAAGCTCAGAGTCTGAGATTGTAGATGACAGCAGCTATGCCAGCGAACCTTCACCTTCTCGGTGGAGGGCTAAGCAAGATGTTCTTTCAAAGCTAGGAATGAAGCTGCGCAGGCATTCAATTGATGATAAACTTGGTGAGAGTGATCTCTTGGATTCAGCTGAGCTTGAACTGATGAAGGAAAGATTTGCAAAGCTTTTGCTGGGAGAAGACATGTCTGGTAGTGGGAAAGGTGTCTGCACTGCAGTTACAATCTCAAACTCCATAACCAATCTCTATGCAACTGTATTCGGACAAAGTTTGAAGTTGGAACCGCTAAAGCCTGAGAAGAAGGCTATGTGGAAAAGGGAAATGAAGGTTCTCTTATCGGTGTGTGAATACATACAAGAATTTGCTCCAACTGCACAATACTTAGAAGATGGCACAATTGTTGAGATGATGAAAAGCAGGCCAAGGTCAGACATCTACATCAACCTCCCTGCACTGCAGAAGCTTGATACAATGCTCATAGAAATATTAGATACTTTCCACGACACTGAATTTTGGTATGCAGAGAACATACCAGGGAATTCGAATCGATTACGTGGAGCATCAAGTCGAAGAACTGCTCCAAGAAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCTTCCTGGTGGCCTATCTGACATGTCAAAAAAGCATCTGATAGAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCTGCCATGGCAATAAACAGCAATGTTCTTGCAGAAATAGATATCCCGGAAAATTATATAGATAATCTTCCCAAGCTGAAATTCTATTGCCAAGTGATTGAGGATTCAATTAAATGTGACCCCATAAAGCAAATGTCTTGGAATTTTTCATCAAATTTCATAAGCCTTTTATGGAAGCCAATAATAGCAGCCGAGACATGTAGAAAACGGGATGATATAGTTTCAATTAAGAGTGGAAGATCAAGTCTGGGGGACTCAATTTACAATTACATGAACAATGCAGACAAATTCTCACCTGAACAACTTCTTGACTGTCTCAAAATAAGCTCTGAACGTGAAGCACTTGAGCTAGCAGACAGGGTTGAGTCATCAATGTACACGTGGAGACGCAAGGCTTGTCTGAGCCATTCAAAGTCATCATGGAGCAAAGTAAAGGATCTCATTGAAGAGACAGATTCTAAGGACAAAAACTACACCTTAGCTGAGAGAGCTGAGTCCTTATTGCTTTGCCTGAAGCAAAGATATCCTGAACTTTCACAAACTTCTCTGGACACATGCAAGATCCAATACAACCGGGATGTAGGGAAAGCAGTACTAGAGAGCTATTCTAGAGTTTTGGAAAGCTTAGCATTCAACATTGTTGCATGGATTGAAGATGTTCTTTATGTAGATAAATCAATGAGGAATCGAGAGGTTTAG 1542 0.4086 MDKASNFDENSEVGYHPSPSNTTAFSPMSRDSFAYCQTWTSSESEIVDDSSYASEPSPSRWRAKQDVLSKLGMKLRRHSIDDKLGESDLLDSAELELMKERFAKLLLGEDMSGSGKGVCTAVTISNSITNLYATVFGQSLKLEPLKPEKKAMWKREMKVLLSVCEYIQEFAPTAQYLEDGTIVEMMKSRPRSDIYINLPALQKLDTMLIEILDTFHDTEFWYAENIPGNSNRLRGASSRRTAPRKDEKWWLPVPCVLPGGLSDMSKKHLIEKRDCANQIHKAAMAINSNVLAEIDIPENYIDNLPKLKFYCQVIEDSIKCDPIKQMSWNFSSNFISLLWKPIIAAETCRKRDDIVSIKSGRSSLGDSIYNYMNNADKFSPEQLLDCLKISSEREALELADRVESSMYTWRRKACLSHSKSSWSKVKDLIEETDSKDKNYTLAERAESLLLCLKQRYPELSQTSLDTCKIQYNRDVGKAVLESYSRVLESLAFNIVAWIEDVLYVDKSMRNREV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00532 513 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 32 512 IPR038937 GO:0005085
Vimu6g00532 513 Gene3D PRONE domain, subdomain 2 353 471 - -
Vimu6g00532 513 FunFam Rop guanine nucleotide exchange factor 2 353 471 - -
Vimu6g00532 513 Gene3D PRONE domain, subdomain 1 88 327 - -
Vimu6g00532 513 ProSiteProfiles PRONE domain profile. 85 513 IPR005512 GO:0005085
Vimu6g00532 513 MobiDBLite consensus disorder prediction 11 28 - -
Vimu6g00532 513 FunFam Rop guanine nucleotide exchange factor 14 87 319 - -
Vimu6g00532 513 MobiDBLite consensus disorder prediction 1 28 - -
Vimu6g00532 513 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 94 307 IPR005512 GO:0005085
Vimu6g00532 513 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 358 509 IPR005512 GO:0005085
Vimu6g00532 513 FunFam Rop guanine nucleotide exchange factor 14 380 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00532 Vimu-Chr6 6487464 6497756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00532 - - gmx:100806086 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00532 6 6487464 6497756 Vimu6g00532 6 6487464 6497756 ECH
Vimu6g00532 6 6487464 6497756 Vimu9g00306 9 3715255 3717524 PCT