Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00502 ATGGCGAAGGAAGAAGGTGAGTGGAGTCTCTTGCGATTTTTGTTTCTGCTATTCCGTGATTTATCTTTTTGTCTGTTTGATCTTGTTGCAGTGTTTGAGTTTCTCGGGAACGTGCCTCTGCTACAGAGGCTTCCTGGCTCGTCTGTTCGGAAGATATCTGAGCTTGTAATTCCCAAATACTATGAGCCGAGAGAGTATGTTGTTCGTAAGGGGGAACGTGGGGATGGTCTGTACTTCATCTGGGAAGGAGAGGCTGAGGTTGTTGACTCTGTTAGTGCTGATGATGATCATCCAGAGTTTCAATTGAAAAGATATGACTACTTTGGTTTTGGGTTATCAAATGAAGTTCACCTTGCTGATGTCATGGCTTTGACAAAGCTATCGTGCTTGGTACTGCCCCATGAGCATTCAGCATTGCTGCAATCGAAGTCTATCTGGAGTGCAGAAAAATCTGTTGATACATGCTCGCCTGTGGAGCATATACTGCATTTGGAACCTATAGAGGTAGATATCTTCCGAGGAATCACTCCTCTAGATGCTCCAAAATTTGGAAAAGTATTTGGTGGACAAATAGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACATACCCATTATATATCAAGTTAGCCGTCTCCGTGATGGGAAGAGTTTTGCTACTAGGAGAGTGGATGCAATTCAAAACGGAAACGTCATATTCACTTTGCTGGCTTCATTTCATCTTTTGTCTTTGGAAGAGCTTCGGGAGCAACGTCTTACCGACCCTCGCCTTCCAAGAACTTACCGGAACAAGGTTGCTACAGTTGAATTCATTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAGAACTTCAACAAATCAGACCAAATCTCCCCCTAGTTTGAGATACTGGTTCAGAGCAAGGGGAAAACTTTCAGATGATCAGGCCTTGCATAGGTGTGTGGTAGCGTATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTGAATCCCAACCGTAGGAAGGGCATGAAGACACGTGCTGTGAGTCTGGACCACTCCATGTGGTTTCACAGACCTTTAAGAGCCGATGACTGGGTTCTATTTGTGATCTTCAGTCCTACTTCCTGTAATGCCCGGGGCTATGTCACTGGCCAAATGTTCAACCAAAAGGGAGAGGTAAGGGATTATCTCTTCACATCACTTTGTCTACACACTCTTGATTATCCATGTTTGGTTGTTTGA 1287 0.439 MAKEEGEWSLLRFLFLLFRDLSFCLFDLVAVFEFLGNVPLLQRLPGSSVRKISELVIPKYYEPREYVVRKGERGDGLYFIWEGEAEVVDSVSADDDHPEFQLKRYDYFGFGLSNEVHLADVMALTKLSCLVLPHEHSALLQSKSIWSAEKSVDTCSPVEHILHLEPIEVDIFRGITPLDAPKFGKVFGGQIVGQALAAASKSVDCLKVVHSLHVYFLLVGDFNIPIIYQVSRLRDGKSFATRRVDAIQNGNVIFTLLASFHLLSLEELREQRLTDPRLPRTYRNKVATVEFIPWPIEIRFCEPRTSTNQTKSPPSLRYWFRARGKLSDDQALHRCVVAYTSDLIFLQVSLNPNRRKGMKTRAVSLDHSMWFHRPLRADDWVLFVIFSPTSCNARGYVTGQMFNQKGEVRDYLFTSLCLHTLDYPCLVV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00502 428 CDD Thioesterase_II_repeat1 316 407 - -
Vimu6g00502 428 Gene3D Jelly Rolls 27 149 IPR014710 -
Vimu6g00502 428 SMART cnmp_10 40 156 IPR000595 -
Vimu6g00502 428 Pfam Thioesterase-like superfamily 185 407 - -
Vimu6g00502 428 CDD CAP_ED 40 136 IPR000595 -
Vimu6g00502 428 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 67 83 IPR018488 -
Vimu6g00502 428 Pfam Cyclic nucleotide-binding domain 59 135 IPR000595 -
Vimu6g00502 428 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 155 262 IPR029069 -
Vimu6g00502 428 ProSiteProfiles cAMP/cGMP binding motif profile. 40 109 IPR000595 -
Vimu6g00502 428 PANTHER ACYL-COA THIOESTERASE 143 408 IPR003703 GO:0006637|GO:0047617
Vimu6g00502 428 FunFam Acyl-CoA thioesterase II 26 148 - -
Vimu6g00502 428 CDD Thioesterase_II_repeat2 170 261 - -
Vimu6g00502 428 SUPERFAMILY cAMP-binding domain-like 32 136 IPR018490 -
Vimu6g00502 428 Gene3D Hotdog Thioesterase 272 409 - -
Vimu6g00502 428 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 283 407 IPR029069 -
Vimu6g00502 428 Gene3D Hotdog Thioesterase 150 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00502 Vimu-Chr6 5770751 5783583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00502 30 408 Acyl Lipid Metabolism Gene Families AT1G01710 65.000 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00502 K01068 - gmx:100805018 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00502 6 5770751 5783583 Vimu6g00502 6 5770751 5783583 ECH
Vimu6g00502 6 5770751 5783583 Vimu9g00316 9 3813284 3821913 PCT