Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00286 ATGGCTTCTTCGGAAGCCGATTCCCGTCTGAAGCAGGTGCTCGTTCCCGCGCTCGAGAAAATCATCAAGAACGCGTCGTGGAGAAAACACGCGAAGCTCGCGCACGAGTGCAAATCCGTGATCGAAAACCTAACCTCACAGCCGAAGACTCAGTCGCCGGCCTCCGACGACGCCGCCGATCCGGAGGCATCGGTACCCGGCCCGATCCACGATGGAGGTCCAGTGGAGTACTCGCTCGCAGAGTCCGAGTCGATCCTACGCCCGCTCATCGCAGCCGCGGGCTCCGGCGTCGTGAAGATCGCCGATCCCGCTGTCGACGCCGTACAGCGACTCATCGCGCACGGATTCCTTCGCGGCGAAGCCGACTCCGGCGGCGGCGCGCCTGAGGCCAAGCTGCTCGCGAGCCTGATCGAGGCAGTGTGCAAGTGCCACGAATTCGGCGACGACGCCGTCGAATTGCTCGTGCTGAAGACGCTCTTGTCAGCGGTGACTTCGATTTCGCTGCGAATTCACGGCGATTGCTTGCTCTTGATTGTGAGAACTTGTTATGACATATTCCTAGATAGTAAGAATTTGGTGAATCAGACGACGGCGAAAGCGTCGTTGATTCAGATGTTAGTGATTGTGTTTAGGAGGATGGAGGCGGATTCGTCCACGGTTCCCGTTCAGCCTATTGTTGTGGCTGAATTGATGGATCCTGTAGAGAAATCTGACGCGGAAAACTCCATGACGCAGTCTGTACAGGGTTTTATCACCAAGATTGTGCAGGACATCGATGGAGTTCTGAATCCGGTGGCGCCGTCTTCTTTGGGCGCACATGACGGTGCCTTTGAGACAACAGTGGCGGCAACCGTGGAGGCTGCGAATCCGGCGGATTTGTTGGATTCCACTGACAAAGACATGTTGGATGCCAAGTATTGGGAGATCAGTATGTATAAGACGGCATTGGAAGGGAGGAAAGAGGAGCTGGTGGATGGCGAGGTGGTGGAGAGGGACGATGATCTGGAGATTCAGATTGGGAATAAGCTCAGGAGAGATGCATTTTTGGTGTTCAGGGCGCTTTGTAAGTTGTCCATGAAGACGCCGACGAAGGAGGCATCTGTGGACCCTCAGTTGATGAAGGGGAAGATTGTGGCCTTGGAGTTATTGAAGATCTTGTTGGAGAATGCTGGAGCTGTCTTCAGGACTAGCGAAAGGTTTTTGGGTGCCATCAAGCAGTACTTATGTTTATCATTGCTGAAGAACAGTGCCTCAACTCTTTTGATCGTTTTTCAGCTATCTTGCTCCATCTTCATTAGTCTGGTATCGAGATTTAGAGCTGGACTGAAAGCAGAAATTGGAGTATTTTTCCCCATGATTGTTCTTAGGGTTCTAGAAAATGTTGCTCAACCTAATTTCCAGCAAAAGATGATTGTGCTTCGTTTTCTGGAGAAGCTCTGCGATGATTCACAGATATTGGTAGACATTTTTATCAATTATGACTGTGATGTCAATTCAACAAACATATTTGAGAGGATGGTAAATGGACTCCTTAAAACTGCCCAGGGTGTCCCTCCTGGTGCAACAACCACAGTTTTGCCACCTCAAGAGGAAACACTGAAACTTGAAGCCATGAAGTGTTTAGTTGCTGTTTTAAAATCGATGGGAGACTGGATGAACAAACAATTGCGCATTCCAGATCCTCTTTCAGGCAAAAAAGTTGAAGCAGTTGATAATGACCATGATGCTGGAGTTCCTCCCACTGCAAATGGGAATGGTGAAGAGCCAGCTGAAGGTGGGATTGTGGTCGCTGCAATTAAAGGGGTTACCAATATTCCCTCTCATATCCAGGACTTCCATCCTAGAGAAGGTATATCACTTTTTAACAGGAAGCCAAAGAAAGGAATTGAATTCCTCATCAATGCCAACAAAGTAGGTAATTCACCAGAGGAAATAGCAGCTTTTCTTAAAGATGCATCTGGGTTGAACAAGACTTTGATTGGGGATTATCTAGGAGAAAGGGAAGATTTATCTTTGAAAGTAATGCATGCATATGTGGATTCTTTTGACTTTCAAGGGTTGGAGTTTGATGAAGCAATCAGGGCCTTTCTTCAAGGCTTTAGACTGCCTGGTGAGGCACAGAAAATTGATCGAATTATGGAAAAGTTTGCAGAACGATATTGCAAATGTAACCCAAAAGTCTTTTCTAGTGCTGATACAGCGTATGTTCTTGCCTATTCTGTGATACTGCTTAACACTGATGCTCATAATCCTATGGTGAAAAACAAGATGTCGGCTGAAGATTTCATAAAAAATAATCGTGGCATAGATGATGGAAAAGATGTACCAGAAGAATACTTGAGGTCTTTGTATGAACGAATATCTAGAAATGAGATCAAAATGAAAGAAGTTGATCTGGAAACCCAGCAAATACAGGCTGTGAACTCGAACAGACTTTTAGGCTTGGATAGTATATTGAATATTGTGATCCGGAAGCGAGGGGAAGACAGTAATATGGAGACCAGTGATGATCTAATCCGACATATGCAGGAACAATTCAAAGAAAAAGCTCGCAAAACTGAGTCAATCTATTATGCAGCAACTGATGTTGTAATCCTCAGATTCATGATTGAGGTCTGCTGGGCACCAATGTTAGCTGCCTTCAGTGTTCCTCTCGATCAAAGTGATGATGAATTTATAATAGCGCTGTGTCTTGAGGGCTTTCGATATGCTATTCATGTTACTTCTGTAATGTCCATGAAGACTCACAGAGATGCTTTTGTGACTTCATTAGCAAAATTTACCTCCCTTCATTCTCCTGCTGATATTAAGCAGAAAAATATAGATGCGATCAAGGTGATTGTTACTATTGCTGATGAGGATGGGAATTACTTACAAGAAGCTTGGGAGCATATCTTGACCTGTGTTTCCCGATTTGAACATCTACATCTTCTTGGAGAGGGGGCCCCACCAGATGCCACATTCTTTGCATTCCCTCAAAATGATTCTGAAAAAACAAAGCAATCAAAATCAACTATTCTTCCTGTTTTAAAGAAGAAGGGAGCCGGAAGGATGCAATATGCAGCTGCCACAGTGATGCGGGGTTCATATGATAGCACCGGAATCGGTAGTAATACTTCTGGAGCTGTGACGTCGGAACAGGTGAACAATCTAGTCTCCAATTTGAACATGTTGGAACAAGTCGGAAGCTCGGAAATGAATCGCATATACACTCGGAGTCAGAAGCTGAACAGTGAGGCCATAATAGATTTTGTCAAGGCTCTGTGCAAAGTTTCCATGGAGGAACTTAGATCTCCATCTGATCCACGGGTGTTCAGCCTTACAAAGATAGTTGAGATTGCACACTATAATATGAACCGCATCAGGCTTGTCTGGTCAAGCATATGGCATGTTCTCTCAGATTTCTTTGTAACCATTGGCTGTTCTGGGAACCTTTCAATTGCAATTTTTGCAATGGATTCCTTGCGTCAGTTGTCAATGAAATTTCTGGAGCGAGAGGAATTGGCTAATTATAATTTTCAGAATGAATTTATGAAGCCTTTCGTCATTGTTATGAGGAAGAGTAGTGCTGTTGAAATTAGAGAACTTATCATTAGATGTGTCTCCCAAATGGTTTTATCTCGGGTCAACAATGTAAAATCAGGATGGAAGAGCATGTTCATGGTATTCACAACAGCAGCATATGATGACCACAAAAATATTGTACTCTTGTCTTTTGAAATTATGGAGAAAATTATTCGAGATTACTTTCCATACATCACTGAGACTGAAACCACCACCTTTACAGATTGTGTTAATTGTCTAATTGCATTCACCAATAGTAGATTTAACAAAGAGATTAGCCTAAATGCCATTGCTTTCCTTCGATTCTGTGCCACAAAACTAGCAGCAGGTGACCTTGGATCTTCGTCCAGAAATAGTGACAAGGAAATTTATGGAAAGGTGTCTACTCCTTCACCTCGAACAGGAAAAGAGGGGAAACAAGAAAATGGGGAGGTGACAGACAAAGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCTGGTTTGTCTGAACTTAGCTTTGACCCAAGATCTGAAATAAGGCAAAGCGCCTTGAAAGTCCTGTTTGAAACCTTACGCAACCATGGCCACCTCTTTTCACTACCTTTATGGGAAAGAGTATTTGAATCAGTACTATTTCCAATATTTGATTATGTTCGTCATGCCATTGATCCTTCTGGGAGTAACTCAGAGGTCAATGAATCAGAGACTGACGGTCAGCTTGATCAAGATGCATGGCTTTACGAGACATGCACACTAGCCCTGCAATTGGTTGTAGATCTTTTTGTCAACTTCTATAACACTGTCAATCCACTTTTAAGGAAGGTTTTGATGCTCCTGGTAAGCTTTATAAAGCGCCCTCATCAAAGCCTGGCTGGCATTGGTATTGCTGCTTTTGTTCGTTTGATGAGTAATGCTGGGGAGCTGTTTTCTGATGAGAAGTGGTTAGAAGTGGTTTTTTCACTAAAAGAAGCAGCAAATGCAACACTCCCTAACTTTCAATTCCTTGACAGTGAAGACATTATGACTGGAAATCATGAACATGCTTCAATGGCTGAAGATGACAGGGATCATGCGCAGTCTGGCTCACATGATAGTTTACAAAGCGTGAGGACTCAACATCTTTATGCACATTTATCTGATGCAAAGTGCCGAGCTGCTGTTCAGCTTTTATTGATCCAGGCGGTGATGGAGATCTATAACATGTACCGATCTCAGCTTTCAGCAAAAGCTATACTTGTCTTGTTTGAGGCTTTGCATGATGTGGCATTACATGCTCACAAGATTAACAGCAATCTTATTTTACGTTCAAAATTACAAGAGTATGGCTCTATGACTCAAATGCAAGACCCTCCACTGTTACGCCTGGAGAATGAGTCCTACCAAATATGCCTCACATTTTTACAGAACCTTGTTGTGGATACGCCTCCTAATTATGAGGAGATTGAGGTAGAGACACTTTATGTTCAGCTTTGTCAGGAAGTCTTGAAGTTTTATATTGAAGTTGCAGGTTCTGGAAGAGTATCCGAATCTTCTAATGGTAGGCAGCTGAATTGGTTAGTTCCACTAGGGTCTGGAAAGAGGAGAGAATTGGCTGCACGTGCACCACTTGTTGTGGCCTCTCTTCAAGGTATGTGTAATTTGGGAGATACATCTTTGGAGAAGAACCTGGATCATTTTTTCCCTCTTATCACTAGCTTGATAAGTTGCGAACACGGGTCAACTGAGGTTCAGGTAGCTCTCAGTGATATGCTTAGTTTATCAGTTGGTCCTCTTCTGCTACGCTCATGTTAA 5337 0.4386 MASSEADSRLKQVLVPALEKIIKNASWRKHAKLAHECKSVIENLTSQPKTQSPASDDAADPEASVPGPIHDGGPVEYSLAESESILRPLIAAAGSGVVKIADPAVDAVQRLIAHGFLRGEADSGGGAPEAKLLASLIEAVCKCHEFGDDAVELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIFLDSKNLVNQTTAKASLIQMLVIVFRRMEADSSTVPVQPIVVAELMDPVEKSDAENSMTQSVQGFITKIVQDIDGVLNPVAPSSLGAHDGAFETTVAATVEAANPADLLDSTDKDMLDAKYWEISMYKTALEGRKEELVDGEVVERDDDLEIQIGNKLRRDAFLVFRALCKLSMKTPTKEASVDPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCDDSQILVDIFINYDCDVNSTNIFERMVNGLLKTAQGVPPGATTTVLPPQEETLKLEAMKCLVAVLKSMGDWMNKQLRIPDPLSGKKVEAVDNDHDAGVPPTANGNGEEPAEGGIVVAAIKGVTNIPSHIQDFHPREGISLFNRKPKKGIEFLINANKVGNSPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGLEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKVFSSADTAYVLAYSVILLNTDAHNPMVKNKMSAEDFIKNNRGIDDGKDVPEEYLRSLYERISRNEIKMKEVDLETQQIQAVNSNRLLGLDSILNIVIRKRGEDSNMETSDDLIRHMQEQFKEKARKTESIYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEFIIALCLEGFRYAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKVIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSEKTKQSKSTILPVLKKKGAGRMQYAAATVMRGSYDSTGIGSNTSGAVTSEQVNNLVSNLNMLEQVGSSEMNRIYTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSGNLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLSFEIMEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKEISLNAIAFLRFCATKLAAGDLGSSSRNSDKEIYGKVSTPSPRTGKEGKQENGEVTDKDDHLYFWFPLLAGLSELSFDPRSEIRQSALKVLFETLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGSNSEVNESETDGQLDQDAWLYETCTLALQLVVDLFVNFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGELFSDEKWLEVVFSLKEAANATLPNFQFLDSEDIMTGNHEHASMAEDDRDHAQSGSHDSLQSVRTQHLYAHLSDAKCRAAVQLLLIQAVMEIYNMYRSQLSAKAILVLFEALHDVALHAHKINSNLILRSKLQEYGSMTQMQDPPLLRLENESYQICLTFLQNLVVDTPPNYEEIEVETLYVQLCQEVLKFYIEVAGSGRVSESSNGRQLNWLVPLGSGKRRELAARAPLVVASLQGMCNLGDTSLEKNLDHFFPLITSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 1778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00286 1778 SUPERFAMILY Sec7 domain 614 800 IPR035999 GO:0005085|GO:0032012
Vimu6g00286 1778 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 685 803 - -
Vimu6g00286 1778 Pfam Sec7 domain 615 792 IPR000904 GO:0005085|GO:0032012
Vimu6g00286 1778 Gene3D - 615 684 - -
Vimu6g00286 1778 Pfam C-terminal region of Mon2 protein 1342 1414 IPR032817 -
Vimu6g00286 1778 Pfam BIG2 C-terminal domain 1569 1767 IPR046455 -
Vimu6g00286 1778 MobiDBLite consensus disorder prediction 44 73 - -
Vimu6g00286 1778 CDD Sec7 615 792 IPR000904 GO:0005085|GO:0032012
Vimu6g00286 1778 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 69 1643 - -
Vimu6g00286 1778 MobiDBLite consensus disorder prediction 1300 1332 - -
Vimu6g00286 1778 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 216 IPR032629 -
Vimu6g00286 1778 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 344 502 IPR032691 -
Vimu6g00286 1778 SUPERFAMILY ARM repeat 379 1507 IPR016024 -
Vimu6g00286 1778 ProSiteProfiles SEC7 domain profile. 616 790 IPR000904 GO:0005085|GO:0032012
Vimu6g00286 1778 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 608 683 - -
Vimu6g00286 1778 SMART sec7_5 607 792 IPR000904 GO:0005085|GO:0032012
Vimu6g00286 1778 Pfam Domain of unknown function (DUF1981) 1161 1243 IPR015403 -
Vimu6g00286 1778 Gene3D - 685 805 IPR023394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00286 Vimu-Chr6 3476501 3494486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00286 K18442 - gmx:100789988 3197.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00286 6 3476501 3494486 Vimu6g00286 6 3476501 3494486 ECH
Vimu6g00286 6 3476501 3494486 Vimu9g00552 9 6702169 6708903 PCT