Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00202 ATGCAATTTTCCGAGAAAGAGTCTAAATGTTGGGACCTGAGAGTTTGTTTTCTTTGCTCTGCACTTCTGGGAGGTCTTGTTATGGCATTGTTGCTGGGAATGGACGAAACTTCTCAAGCTAAGGATAGTGATTCTGAACATGATGTGGAGTTTGCTGCTGGCAATGTCAAACTTATTACCACCAAAGAAGCTTGGGACCAATATTTGGAAGAAGCTAGGAGGGATGGCAAAATTGTGATTGCGAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGGTGATTGCGCCATATTACTGCGAGTTATCTGAGAAATACACATCCATGATGTTCTTGTTAGTTGATGTGGATGAACTAACTGAGTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGACAACAACTTGACAAACTTGTAGGAGCCAACAAGCCAGAGTTGCAGAAGAAGATTGTTGCCATCAATGATTCACTTCCCGAATGCAAGCAGTGA 510 0.4216 MQFSEKESKCWDLRVCFLCSALLGGLVMALLLGMDETSQAKDSDSEHDVEFAAGNVKLITTKEAWDQYLEEARRDGKIVIANFSATWCGPCKVIAPYYCELSEKYTSMMFLLVDVDELTEFSTSWDIKATPTFFFLKDGQQLDKLVGANKPELQKKIVAINDSLPECKQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00202 169 SUPERFAMILY Thioredoxin-like 51 157 IPR036249 -
Vimu6g00202 169 PANTHER THIOREDOXIN 56 157 - -
Vimu6g00202 169 CDD TRX_family 63 157 - -
Vimu6g00202 169 ProSitePatterns Thioredoxin family active site. 80 98 IPR017937 -
Vimu6g00202 169 PRINTS Thioredoxin family signature 126 137 - -
Vimu6g00202 169 PRINTS Thioredoxin family signature 79 87 - -
Vimu6g00202 169 PRINTS Thioredoxin family signature 87 96 - -
Vimu6g00202 169 FunFam Thioredoxin 53 162 - -
Vimu6g00202 169 Pfam Thioredoxin 59 157 IPR013766 -
Vimu6g00202 169 Gene3D Glutaredoxin 34 168 - -
Vimu6g00202 169 ProSiteProfiles Thioredoxin domain profile. 34 162 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00202 Vimu-Chr6 2594770 2597021 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00202 K03671 - gmx:100813401 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00202 6 2594770 2597021 Vimu6g00202 6 2594770 2597021 ECH
Vimu6g00202 6 2594770 2597021 Vimu9g01611 9 25387471 25391445 PCT