Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00133 ATGGCCAGCTTGAAGATTGCATGCATGGTTGTGATGTGTATGGCTGTGGTGGGTGCACCGATGATGGTGCAAGGCATTACATGCAGCGAAGTGACAACAGACATGTCACCGTGCCTATCTTACCTGAAAAATGGTGGAGAGGTTCCAGAAGCGTGCTGTGGAGGAGTTAGGAGCGTTATGGGAGCAGCTGGAACAACCTCTGAAAAACAAACCGTCTGCAACTGTCTTAAGCAAGATGCTAATAACTTCGGCGTTAACGATGATTACGCTCAGGAACTCCCCACTCTCTGCGGTGTCAGCGTTGCTTACAAGATCAGCCGCTCCACCAACTGTGAAAAGTATGTTCTTCTGTTCTTCTTCTTTCTACAAAAACTAAAACTAAAACGTTGTATGATTTTACAGTTCCATACTTTATGTTGTTCAATTCTATAA 432 0.4468 MASLKIACMVVMCMAVVGAPMMVQGITCSEVTTDMSPCLSYLKNGGEVPEACCGGVRSVMGAAGTTSEKQTVCNCLKQDANNFGVNDDYAQELPTLCGVSVAYKISRSTNCEKYVLLFFFFLQKLKLKRCMILQFHTLCCSIL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00133 143 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 6 113 IPR000528 GO:0006869|GO:0008289
Vimu6g00133 143 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Vimu6g00133 143 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Vimu6g00133 143 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Vimu6g00133 143 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Vimu6g00133 143 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Vimu6g00133 143 SMART aai_6 28 111 IPR016140 -
Vimu6g00133 143 Pfam Probable lipid transfer 14 104 IPR016140 -
Vimu6g00133 143 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 113 IPR036312 -
Vimu6g00133 143 CDD nsLTP1 26 111 - -
Vimu6g00133 143 Gene3D - 25 114 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00133 Vimu-Chr6 1722315 1722746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00133 26 112 Acyl Lipid Metabolism Gene Families AT5G59310 50.575 2.68e-24 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00133 - - pvu:PHAVU_008G087100g 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00133 6 1722315 1722746 Vimu9g00920 9 15136419 15136832 PCT