Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00056 ATGTTTGGTTTGGACGAAAACCAAGAAAAGTTCAGCCATTTCAGTGGACGGAACCCTTCTTCCATAGAAGTAGTTTCATCAGGGTTGAACTCAACGACGTCGTTTGGAGCGGTGAACATGATAGAGAACCCTTTGACATTGGAACCCCAATTGAACTCTGAGTTGGTGGGGAAGGCAGAAGGGTTCTATGCTTCGACGTCGCAGAGTGAAGTTACCTTGTTGATGGCGATGAACTTCGCCATCACTGAAGGGAAGTACAATGGCAGCAGCTTCACCATTCTTGGAAGGAACCCTGTTTTCAACAAGCAGAGGGAGATGCCTGTGATCGGTGGAAGTGGTCTCTTTCGATTTGCTAGGGGTTATGCTCAGCTCAGAACTCACTGGTTCTCGCCCACCACCAGGGATGCCATTGTTGAGTATACTGAGGAAGTGCTCTTTCTTGGTGTGTCTAAGTGGTGGAGTATACCTACAAAGCAGAGTCAAGTTGTTCATCTTTTTGTGTGTCAAAAGGAGATCATACTCAAAGAGCTAGTGAGGTTAACCCTGTCACAACTAGATGAGATACATGAATTCAATTTGATAACAAGGTATAGAAAAGAACGAGATGATGCTGGTTCAGCTTCACTCGCTACTGCAACAATGCACATAATCTTCGCGCCAATTCTCCGCATGCCCAAACTCATTCCATTCTCCCTTCAATTCTCAAACCTCTCTTCGTCTCGTTCATTTCACCAGTCCCAAAATGCACCCTCAAACCAGAACATCGCTACCATTGTTCACTCCCTCTGCGACTCTCGCCGTTTCTCCGAAGCGCAATATCGCTTCTCCCTCTCCCTCGCCTCCGGCTCCCTCCCCGATGAGCGCACCTGCAACGTCCTCCTCGCTCGCATGCTCGCTTCTCGAACACCTCACGCCACGTGGCGCCTCATCCAATCCCTCATCGCTTCCAAGCCCGGTTTCGTTCCCTCTTTGGTCAACTACAACCGTCTGATGGACCAGTTTTGCGGTGCCCATCAACCCCTGGACGCTCACAGGCTGTTTTTTGACATGAAGAGTCGTGGCCATCGCCCAAATGTTGTCTCTTTCACCACTTTGATTAATGGGTATTGCTTGGTTCGAGGTATTAGGGACGCGCGCAAGGTGTTTGATGAAATGCTTGAGAGTGGCGTGGAGCCGAATTCGGTGACTTGTAGTGTTTTGATTCGCGGTGTTCTTCGGGAGAGAGACCTGGAAGGTGGGAGGGAGTTGATGTGCAGGTTGTGGGAGATGATGAGTGTGGAAGCAGAAGATTCTGTGAAGACCGCGGCATTTGCAAATTTGGTTGATTCCTTGTGCAGGGAGGGGTTTTTTGGTGAAGTGTTTAGGATTGCCGAGGAGTTGCCCTTCGGGAGTGGTTTTTCTGAGGAGGTTGCTTATGGACAGATGGTGGATTCTCTTTGCAGAGTTGGGAGGCATAATGGGGCAGCTAGGATTGTTTACGTAATGAGGAAAAGAGGGTTTGTTCCGAGTGAGGTGTCGTATAATTATGTCATTCATGGGCTTAGCAGGGATGGTGATTGTATGAGGGCTTATCAGTTGTTAGAGGAAGGAGCTGAATTTGGGTTTATCTTATCTGAGCATACTTATAAGGTACTCGTGGAAGCTCTTTGCCAAGTGTTTGATGTGGACAAGGCGAGGGAAGTTTTGAAACTCATGCTGAGTAAGAAAGGTGTTGACAAGACTAGGATTTACAACATTTACTTGAGAGCTCTTTGTCTTGTGAGCAACCCGACAGAGCTTTTGAATGTACTTGTTTTTATGCTTGAGACCCAGTGCCATGCTGACGTGATCACCCTCAACACGGTGATCAATGGCTTTTGCAAGATGGGTAGGGTTGATGAAGCATCAAAGGTATTGCATGACATGTTAATAGGAAAATTTGCTGCACCTGATGTTGTGACCTTCACGACTTTAATTTCTGGTATGTTGGATGCTGCAAGAATCAATGAAGCTCTAGATCTGTTTCATAAGCTGATGCCTGAAAATGGTATAAGGCCCAGTGTTGTGACTTATAATGCTCTTCTCCGGGGTTTGTTCAAACTAAAGCGACCAAATGATGCATTGATGGTTCTTGATGACATGGTAAATGATGGCATTACGGCAGATAGTACAACATATACAGTTGTGGTAGAAGGTCTATGTGAATCTGATCAAGTAGAAGAAGCAAAGAGATTTTGGCACAATGTTATATGGCCTTCAGGGGTTCATGATAATTTTGTTTATGCAGCAATTCTGAAAGGATTTTGCCGCTCTGGCAATTTTAACGAGGCTTGCCATTTTTTGTATGAATTAGTAGATTCTGGGGTCTCTCCGAATATATTTAGTTATAATATTCTGATCAACTGTGCGTGCAATCTTGGTCTGAAAAGTGAAGCTTACCAGATTGTCAGAGAGATGAAAAAGAATGGTCTCAGTCCTGATTCTGTGACATGGAGAATACTTGACAAGTTAAATGGCAAAGTGGGGAAGGACATCCATTCTGAAGATCATTGTTCATTCTGTGATTCTGTGAGACATAGCTTGGTTGCTTCGAAGGAGATTGGTGTCCAAAGGAGCATTACTTCCTTGGAAGCGTGGTTCGTCAGCATGGACTTCCTTCGAAACGAAAAGGTGAAAGATGCGTTTTTCATTACTTATTTTATGTTGTTGGGGTCCCTCATGGAAGTGGTGTTTCACCATGGGGGAAAGTTTCTGAATACTGGAACATTTGGATATCATGGAGGTGAAACTAGTGGCCCTGTATTAGAAGATATGTTGGAATTGTTAAGTGATGACAAAGGTGCATGTCATGTGGTAAACATTGCTACAATGAATGGTCAAGCTCATTTGCTTGTGGTTCACTTCATATCCCAACTTGATTATCTTCATATGTTAGAATATCATACGCAATCCGAGTTAGGTGAAGTTCAAGGAGGTGAAGTTGAGGGAGGTGAAGTTGAAGGAGGTGAACTTGAGGTAGGTGATATTGAGGTTGGCCAAGTTAAGGTTGATGAAGTTGGTCAGCAAGAACTTCCTCAGGTTGAAGAAGTTGGTCAGCAAGAACTTCCTCAGGTTGAAGTTGTTGAAGTTGGTCAACAAAAAGTTTCTCAGGTTGAAGTTCGTCAGCAAGAAGTTCCTCAGGTTCAAGTTGATCAGAAAGAACTTCCTGAGGTTGAAGTTGAAGTTGAGGATGCTGAAGTTCAGGTTGGTCAACATGGTGAAGAAGGTGATGCTGAAGTTGTAGTTGGAGAGCATGATGAAGTTGAGGGTGGTCAACATGCTGAAGAAGGTGATGATGATGTTGATGAAGTTGTTCAGGAACATGCTGAACTTGATGAAGTTTCTAAAGATACTTTTGAAGATGGTGAGGATAATATTGATGGTGGAGTGGGGGATGGTGAGGATGAGGACTGGCTAGGGGGAACAACAAGGGAATGTAGTACTCGGAACAAGCATGTACAGCCAAGGGGATTAAGTGATAGTGAGTGGGAATATGATAGTTGTGATAGTACATATTTAAGTGATGATTCATATGTTGAAACATCCAGATATGGAGATTTTGCAACCTTCAAAGAGCCCACAAGTATGAAAGAATATAGATGGCAACTTGGTACATATCTCGCTGAAAAAGATGATTTCATTGATGCAATTAGAAGTTATGGAGTACACAATGGTAGAAAGTTGAAGCTGTGGAAGAATGATAAGAGAAGAATTAGCGTGAAATGTTATGGCTCACAAGGGAAATGTCCCTGGTACGCTTATTGTGGATATAGGAGTACCCAACATACATGGAAGCTAAGAAAGATTGTGGACAGGCATACTTGTACTAGAGAATTCAAAATTGGTCTAGTTACCTCTAAATGGTTAAGTGGCAGGTTGGAGAAGAGCATGAAAAGAAATCCTGATATGAAAATGACAAATTTGCATAACAAATTCTGTAAGAAATATAATATTGGTGTGTCTAGGGCTACAACAAGTAGAGCAAAGGCAATGGCAACAACCAACATTGAGGGTAGCTTCAAACAACAATATGAAAGACTCTATGATTATGCAGAGGAGTTGCTGCGGGCAAACCCAAGCTCAACAGTTAAAATTAATGTAGAACCAAACCAAGATCAAACCATATTCAAGAGAATTTATGTGTATTTAAAAGCATGTAAGGACAACTTTGTATCCTGTAGACCAATTATACATTTGGATGGCTATTTCTTAAAAGGGAAATATGGAGGTGAGCTTTTAACTGCTGTTGGAAGAGATGCTAATGACCAGATGTGTCCCTTAGCTTATGCTGTAGTTGAAGTAGAGAATAAGGAATCATGGACTTTTTTCTTGGAATTGTTAATTAAGGATCTTGGAGGTGGGGGATTTTGTTCAAGGTGTACATTTATGTCAGATCAACAAAAAGGACTTCTGCCAACTTTACAAAGTCTATTGCCTAATATGGACCAGAGTTACTGTGTCAGATACATTTATTCAAATTTTAGGAAGAAATTTGCTGGCTTAAACCTCAGACAATTACTATGGAAGGTTGCAGTATCAACAACCCCTGAAGCATGGGAGTCATGTGATCTTAGATGCACGGGGAAAACCAATAATATCAATGTTGGAAGAGATTCGGATGTACTTGATGAACAGATAGGCATCCAATAG 4668 0.428 MFGLDENQEKFSHFSGRNPSSIEVVSSGLNSTTSFGAVNMIENPLTLEPQLNSELVGKAEGFYASTSQSEVTLLMAMNFAITEGKYNGSSFTILGRNPVFNKQREMPVIGGSGLFRFARGYAQLRTHWFSPTTRDAIVEYTEEVLFLGVSKWWSIPTKQSQVVHLFVCQKEIILKELVRLTLSQLDEIHEFNLITRYRKERDDAGSASLATATMHIIFAPILRMPKLIPFSLQFSNLSSSRSFHQSQNAPSNQNIATIVHSLCDSRRFSEAQYRFSLSLASGSLPDERTCNVLLARMLASRTPHATWRLIQSLIASKPGFVPSLVNYNRLMDQFCGAHQPLDAHRLFFDMKSRGHRPNVVSFTTLINGYCLVRGIRDARKVFDEMLESGVEPNSVTCSVLIRGVLRERDLEGGRELMCRLWEMMSVEAEDSVKTAAFANLVDSLCREGFFGEVFRIAEELPFGSGFSEEVAYGQMVDSLCRVGRHNGAARIVYVMRKRGFVPSEVSYNYVIHGLSRDGDCMRAYQLLEEGAEFGFILSEHTYKVLVEALCQVFDVDKAREVLKLMLSKKGVDKTRIYNIYLRALCLVSNPTELLNVLVFMLETQCHADVITLNTVINGFCKMGRVDEASKVLHDMLIGKFAAPDVVTFTTLISGMLDAARINEALDLFHKLMPENGIRPSVVTYNALLRGLFKLKRPNDALMVLDDMVNDGITADSTTYTVVVEGLCESDQVEEAKRFWHNVIWPSGVHDNFVYAAILKGFCRSGNFNEACHFLYELVDSGVSPNIFSYNILINCACNLGLKSEAYQIVREMKKNGLSPDSVTWRILDKLNGKVGKDIHSEDHCSFCDSVRHSLVASKEIGVQRSITSLEAWFVSMDFLRNEKVKDAFFITYFMLLGSLMEVVFHHGGKFLNTGTFGYHGGETSGPVLEDMLELLSDDKGACHVVNIATMNGQAHLLVVHFISQLDYLHMLEYHTQSELGEVQGGEVEGGEVEGGELEVGDIEVGQVKVDEVGQQELPQVEEVGQQELPQVEVVEVGQQKVSQVEVRQQEVPQVQVDQKELPEVEVEVEDAEVQVGQHGEEGDAEVVVGEHDEVEGGQHAEEGDDDVDEVVQEHAELDEVSKDTFEDGEDNIDGGVGDGEDEDWLGGTTRECSTRNKHVQPRGLSDSEWEYDSCDSTYLSDDSYVETSRYGDFATFKEPTSMKEYRWQLGTYLAEKDDFIDAIRSYGVHNGRKLKLWKNDKRRISVKCYGSQGKCPWYAYCGYRSTQHTWKLRKIVDRHTCTREFKIGLVTSKWLSGRLEKSMKRNPDMKMTNLHNKFCKKYNIGVSRATTSRAKAMATTNIEGSFKQQYERLYDYAEELLRANPSSTVKINVEPNQDQTIFKRIYVYLKACKDNFVSCRPIIHLDGYFLKGKYGGELLTAVGRDANDQMCPLAYAVVEVENKESWTFFLELLIKDLGGGGFCSRCTFMSDQQKGLLPTLQSLLPNMDQSYCVRYIYSNFRKKFAGLNLRQLLWKVAVSTTPEAWESCDLRCTGKTNNINVGRDSDVLDEQIGIQ 1555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Vimu6g00056 1555 MobiDBLite consensus disorder prediction 1125 1140 - -
Vimu6g00056 1555 Gene3D Tetratricopeptide repeat domain 420 570 IPR011990 GO:0005515
Vimu6g00056 1555 Gene3D Tetratricopeptide repeat domain 748 855 IPR011990 GO:0005515
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Vimu6g00056 1555 PANTHER ATPASE EXPRESSION PROTEIN 3 534 827 - -
Vimu6g00056 1555 Gene3D Tetratricopeptide repeat domain 637 747 IPR011990 GO:0005515
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 785 819 IPR002885 -
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Vimu6g00056 1555 Gene3D - 5 141 IPR044859 -
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat 541 568 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat 470 500 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat 505 534 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat 753 782 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat 326 354 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat 646 671 IPR002885 -
Vimu6g00056 1555 Pfam Dirigent-like protein 14 141 IPR004265 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 646 680 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 787 821 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 470 504 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 682 715 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 360 393 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 327 359 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 540 569 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 753 786 IPR002885 -
Vimu6g00056 1555 NCBIfam pentatricopeptide repeat 610 637 IPR002885 -
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 644 679 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat family 357 404 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat family 784 827 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat family 679 727 IPR002885 -
Vimu6g00056 1555 Pfam PPR repeat 605 635 IPR002885 -
Vimu6g00056 1555 MobiDBLite consensus disorder prediction 1125 1166 - -
Vimu6g00056 1555 Gene3D Tetratricopeptide repeat domain 295 413 IPR011990 GO:0005515
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Vimu6g00056 1555 Pfam MULE transposase domain 1402 1499 IPR018289 -
Vimu6g00056 1555 Gene3D Tetratricopeptide repeat domain 571 636 IPR011990 GO:0005515
Vimu6g00056 1555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00056 Vimu-Chr6 705979 718878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00056 342 860 Glycosyltransferase AT1G05670 22.638 5.05e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00056 - - gmx:106796792 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00056 6 705979 718878 Vimu9g00864 9 13432473 13433470 PCT
Vimu9g00859 9 13255424 13256392 Vimu6g00056 6 705979 718878 PCT