Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00052 ATGAAAGAATGCCTCTCCAAACAACTCTTTGGCTTACCAGCTCAGCACTTCTCTTATGTGAAGAATATTGATCCAGGATTGCCTCTGTTTTTGTTTAATTATACTGAACGAATGCTTCATGGAATTTTCGAGGCAGCTAGCAAAGGGAGAATGTTTATTGACCCCTATGGATGGACTACTGATGGTTCAGAGAGAACACAATATCCTGCACAGGTGCAAATTTGTGTTCGACTTAAGTGCCAGCCACTGTCCGAAGATAAATTCAAAGAAGTACTTGCAGACAACTACTACACTCATAACCATTTCTGGTTTGAGCTAGACCATGCGCAAACAAGCAGACTTATTTCATTACTATCATCTGGATCAATTGTCTCTGGTAATTCTGTCTCGCAGAATACACCAAATTGGATGACTTTATCTCGACCTCTTACATCAAATGAGACTTGGAGGGAAGATGAAACATCTAAAATGCTTGAATTAGAGACAGAGGTGGTTGAGAACGAAAATGAGGTTAACAGCGTACATGAAAATGAGGTTAACAGCGTACATGAAAATGAGGTCAACAGCGTACATGAAAATGAGGTTAACAGCGTACATGAAAATGAGGTTAACAACGTACATGAAAATGAGGTTAATAGCGTACATTTGAAACTGAAGGAGTTAACTGTTAACTATCTGGAGCAGAGACTGAATTTGGTTTCCACAGTGTCTTGTAGCTGCAAGCAAGCAACACAAGTCGTGACACTGACATTGCAGTGTTCATCTCAGACTAGCCGAAGGGCTAGTACATTGCCACCTCATGTGGGTGCTGAGGTGGCAAAGCCTGGTGGGATGTTAATATGGGATTCTGTTATTGAGGCAGAAAGGGAAATTCAGCATCTTAAAGATCGTTGTAAAATTTTAGAATCTGCTTGTAATATCCCTAATCGTTTGGAACATGTTGAGAAGGCAGTAATAAAGTCGACAGCTGATTTAGATCCCAAAGATTCATTATTTTTAATTGGAGGTTTTGATGGAAGATCATGGTTAGCAACTATGGATTTGTACTGTACTTCTCAGAGTGTGACCAAACCTCTTAAGCCTATGAACTCAGTTCGTTCATATGCTTCAGTTGTGCGGTTGAATAGTGAGATTTATGTTTTTGGTGGTGGAAATGGTTGTGTTTGGTATGACACAGTCGAATCATACAATCCAGTTCATGATAACTGGACCATGTGCCCTTCTTTGAACAAGAAGAAAGGAAGCTTGTCTGGTGCTGCTTTATATGGAAAAATTTTTGCTGTTGGTGGTGGCAATGGAGTTGACATCTATGCAGATGTTGAGATGCTTGATTTTGATATTGGGCGGTGGATCCCTACACGCTCAATGCTAAGCAAGAGATTTGCTCTTGCTGCAGTTGAACTCAACGGGTCAATTTATGCCACTGGCGGGTTTGATGGAAATGATTACTTAAGGTCTGCTGAAAGATTTGATCCCAGGGAACATTCTTGGACCAAAATACCGGACATGAATGTAAAGCGGGGCTGCCATTGCTCAGTTGTTCTGAATGAAAAGTTGTACGCCCTTGGTGGCTTTGACGGCACAAAAATGGTTCAAAGTATCGAGGTGTTTGATCCTCGTCTTGGAGCATGGACAATGGGGGAACCAATGATTCATCCACGGGGTTATTGTGCTGCTGTAGTTGTCAATGAATCCATTTTTATGCTTGGAGGAGTTAGGATTGGCGAGAACATTGTAGATACAGTTGAGAATTATAAGGTCGGTCAGGGATGGCAGGAAACTTGCAGATCAGCAGCTGTTAATAGGTGTTTCTTGTCAGCTATTGCTTGCAGTCAGGAGTAA 1842 0.4137 MKECLSKQLFGLPAQHFSYVKNIDPGLPLFLFNYTERMLHGIFEAASKGRMFIDPYGWTTDGSERTQYPAQVQICVRLKCQPLSEDKFKEVLADNYYTHNHFWFELDHAQTSRLISLLSSGSIVSGNSVSQNTPNWMTLSRPLTSNETWREDETSKMLELETEVVENENEVNSVHENEVNSVHENEVNSVHENEVNSVHENEVNNVHENEVNSVHLKLKELTVNYLEQRLNLVSTVSCSCKQATQVVTLTLQCSSQTSRRASTLPPHVGAEVAKPGGMLIWDSVIEAEREIQHLKDRCKILESACNIPNRLEHVEKAVIKSTADLDPKDSLFLIGGFDGRSWLATMDLYCTSQSVTKPLKPMNSVRSYASVVRLNSEIYVFGGGNGCVWYDTVESYNPVHDNWTMCPSLNKKKGSLSGAALYGKIFAVGGGNGVDIYADVEMLDFDIGRWIPTRSMLSKRFALAAVELNGSIYATGGFDGNDYLRSAERFDPREHSWTKIPDMNVKRGCHCSVVLNEKLYALGGFDGTKMVQSIEVFDPRLGAWTMGEPMIHPRGYCAAVVVNESIFMLGGVRIGENIVDTVENYKVGQGWQETCRSAAVNRCFLSAIACSQE 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00052 613 Coils Coil 284 304 - -
Vimu6g00052 613 Pfam Development and cell death domain 1 117 IPR013989 -
Vimu6g00052 613 PANTHER - 1 608 IPR044832 GO:0034976
Vimu6g00052 613 SMART dcd 1 120 IPR013989 -
Vimu6g00052 613 Coils Coil 150 177 - -
Vimu6g00052 613 SUPERFAMILY Kelch motif 423 609 IPR015915 GO:0005515
Vimu6g00052 613 Pfam Kelch motif 366 410 IPR006652 GO:0005515
Vimu6g00052 613 Pfam Kelch motif 507 550 IPR006652 GO:0005515
Vimu6g00052 613 Pfam Kelch motif 463 504 IPR006652 GO:0005515
Vimu6g00052 613 Pfam Kelch motif 419 456 IPR006652 GO:0005515
Vimu6g00052 613 Gene3D - 316 610 IPR015915 GO:0005515
Vimu6g00052 613 SMART kelc_smart 424 470 IPR006652 GO:0005515
Vimu6g00052 613 SMART kelc_smart 377 423 IPR006652 GO:0005515
Vimu6g00052 613 SMART kelc_smart 518 564 IPR006652 GO:0005515
Vimu6g00052 613 SMART kelc_smart 471 517 IPR006652 GO:0005515
Vimu6g00052 613 SMART kelc_smart 330 376 IPR006652 GO:0005515
Vimu6g00052 613 ProSiteProfiles DCD domain profile. 1 120 IPR013989 -
Vimu6g00052 613 SUPERFAMILY Kelch motif 328 460 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00052 Vimu-Chr6 648088 654149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00052 466 577 EF-hand Containing Proteins AT4G39560 30.833 4.68e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00052 - - vra:106754898 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00052 6 648088 654149 Vimu9g00853 9 13144122 13151727 PCT