Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02079 ATGGATTTGGCATCCAATCTCGGTGGCAAGATTGAAAAGACCGAAGTTCTCTCCGCCGTTGAGAAGTATGAGAAATATCATGTTTGCTATGGTGGTCAAGAGGAGGAGAGGAAAGCTAACTATAGTGATATGGTGAATAAGTACTATGATCTTGTTACCAGCTTTTACGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCGCCCAGATGGAATGGGGAATCTCTTCGGGAGAGCATCAAGCGACACGAACACTTCCTTGCTTTACAACTTCGACTGCAGCCAGGGCAGAAGGTTTTGGATGTTGGATGTGGAATTGGGGGACCATTAAGAGAAATTTCTCGATTCAGCTCAACTTCAATTACTGGGTTGAATAATAATGAGTACCAGATAACAAGAGGAAAGGCTGACTTCATGAAAATGCCAATCCCAGACAACACATTTGATGCAGTGTATGCGATTGAAGCTACTTGCCATGCACCAGATGCTTATGGATGCTATAAAGAGATTTTTAGAGTGTTGAAGCCTGGTCAATATTTTGCTGCTTATGAATGGTGTATGACCGATAGTTTTGATCCCCAAAACTCAGAGCACCAAAAAATCAAGGCAGAAATTGAGATTGGTGATGGGCTTCCTGACATTAGATTGACCACTAAGTGTATTGAAGCTCTGAAGCAAGCAGGTTTTGAGGTAATATGGGAGAAAGATCTAGCAGCTGACTCTCCTCTTCCATGGTACTTGCCTTTAGACAAAAGTCATTTCTCACTGAGTAGCTTCCGTCTAACCGCTGTTGGGCGACTTTTCACAAAAAACATGGTCAAGGTTCTGGAGTATGTTGGACTGGCTCCAAAGGGTAGTCTAAGGGTTCAAGATTTCCTAGAGAAGGCTGCGGAAGGACTAGTTGAAGGAGGAAAGAAAGAGATTTTCACACCAATGTACTTCTTCTTGGCACGGAAGCCTAATTCAGACAGTAACTAA 975 0.4308 MDLASNLGGKIEKTEVLSAVEKYEKYHVCYGGQEEERKANYSDMVNKYYDLVTSFYEFGWGESFHFAPRWNGESLRESIKRHEHFLALQLRLQPGQKVLDVGCGIGGPLREISRFSSTSITGLNNNEYQITRGKADFMKMPIPDNTFDAVYAIEATCHAPDAYGCYKEIFRVLKPGQYFAAYEWCMTDSFDPQNSEHQKIKAEIEIGDGLPDIRLTTKCIEALKQAGFEVIWEKDLAADSPLPWYLPLDKSHFSLSSFRLTAVGRLFTKNMVKVLEYVGLAPKGSLRVQDFLEKAAEGLVEGGKKEIFTPMYFFLARKPNSDSN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02079 324 PANTHER ZGC:194242 2 319 - -
Vimu4g02079 324 Pfam Methyltransferase domain 99 180 IPR013216 GO:0008168
Vimu4g02079 324 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 320 IPR029063 -
Vimu4g02079 324 Gene3D Vaccinia Virus protein VP39 33 254 IPR029063 -
Vimu4g02079 324 CDD AdoMet_MTases 97 176 - -
Vimu4g02079 324 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 48 319 IPR030384 GO:0008168
Vimu4g02079 324 Pfam Sterol methyltransferase C-terminal 256 319 IPR013705 GO:0006694|GO:0008168
Vimu4g02079 324 FunFam Methyltransferase 19 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02079 Vimu-Chr4 23087575 23094767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02079 83 235 Acyl Lipid Metabolism Gene Families AT1G48600 28.571 1.73e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02079 K00559 - gmx:548073 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02762 5 37204420 37208945 Vimu4g02079 4 23087575 23094767 PCT