Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02423 ATGGCCTCTGCATCACCCTCTCTGCTCAAGTCTTCACTTGTTCTTGACAAGTCTGAGTGGGTGAAGGGTCAAACCCTTCGCCAACCTTCTGCATCAGTTGTCAGATGCAGCCCCACCAACCCTTCAGCCCTCACCATCAGAGCCGGTTCATATGCTGATGAGCTTGTTAAGACCGCGAAAACTGTGGCTTCACCAGGGAGGGGAATTTTGGCCATGGATGAGTCCAATGCTACCTGTGGGAAGCGTTTGGCTTCAATTGGGCTAGAGAATACTGAAGCTAACCGCCAGGCATACCGTACCCTTCTTGTGACAGTTCCAGGCCTTGGTCAATACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACAATTGATGGCAGGAAGATTGTTGATGTTCTCATTGAGCAAAACATTGTTCCTGGTATTAAGGTCGACAAGGGTTTGGTTCCTCTTGCTGGCTCCAACGATGAGTCATGGTGCCAAGGTTTGGATGGTCTTGCCTCTCGCTCAGCTGCATACTATCAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAATGGTCCCTCTGCTCTGGCTGTTAAGGAAGCAGCCTGGGGTCTGGCTCGCTATGCTGCAATTTCTCAGGACAATGGATTGGTGCCAATTGTGGAGCCAGAAATCTTGCTTGATGGGGAGCATAACATTGATAGAACTTTTGAAGTAGCCCAAAAGGTATGGGCAGAGGTGTTCTTCTACCTTGCTGAGAACAATGTCCTTTTTGAGGGTATTCTCCTGAAGCCTAGCATGGTTACACCTGGAGCTGAATCAAAGGAGAAGGCAAGTCCTCAAACAGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATTCCCCCTGCAGTCCCTGGAATTATGTTTTTGTCTGGTGGACAGTCTGAGGTTGAAGCTACCCTCAATTTGAATGCCATGAACCAATCTCCAAACCCATGGCACGTGTCATTCTCATATGCCAGAGCCCTCCAAAACACTGCCTTGAAGACATGGGGAGGGCGCCCAGAGAATGTGAAGGCATCACAAGATGCACTCCTTTTCCGTGCCAAGTCCAACTCACTGGCTCAGCTTGGAAAGTACACTGGTGAGGGTGAATCTGAAGAGGCCAAGAAGGAGTTGTTCGTCAAAGGTTACTCCTACTAA 1197 0.4946 MASASPSLLKSSLVLDKSEWVKGQTLRQPSASVVRCSPTNPSALTIRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGQYISGAILFEETLYQSTIDGRKIVDVLIEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHNIDRTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAESKEKASPQTVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRPENVKASQDALLFRAKSNSLAQLGKYTGEGESEEAKKELFVKGYSY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02423 398 NCBIfam fructose-bisphosphate aldolase class I 54 374 - -
Vimu5g02423 398 Pfam Fructose-bisphosphate aldolase class-I 54 398 IPR000741 GO:0004332|GO:0006096
Vimu5g02423 398 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 259 269 IPR029768 -
Vimu5g02423 398 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 49 398 IPR000741 GO:0004332|GO:0006096
Vimu5g02423 398 FunFam Fructose-bisphosphate aldolase 36 397 - -
Vimu5g02423 398 CDD FBP_aldolase_I_a 52 378 - -
Vimu5g02423 398 SUPERFAMILY Aldolase 44 398 - -
Vimu5g02423 398 Gene3D Aldolase class I 34 397 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02423 Vimu-Chr5 34897754 34900219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02423 51 398 Miscellaneous Gene Families AT3G52930 55.682 1.79e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02423 K01623 - gmx:100775844 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02423 5 34897754 34900219 Vimu5g02423 5 34897754 34900219 ECH
Vimu10g03674 10 45825883 45827572 Vimu5g02423 5 34897754 34900219 ECH