Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03674 ATGGCCTCTGCTTCCGCCACTCTTCTCAAGTCATCTCCGGTTATCGACAAGTGCGAATGGGTCAAAGCTCAAACCCTCCGCCACACTCCGCCGCTATCTGTCGTCAGATGCAACCCCGCTTTCACCATCAGAGCTTCCTATGCCGACGAGCTCGTCAAAACTGCGAAAACAGTTGCATCGCCGGGGCGTGGTATTTTGGCGATGGACGAGTCAAATGCAACCTGCGGGAAGCGTCTGGCATCGATTGGGTTGGAGAACACTGAGGCTAACCGCCAGGCATATCGTACACTACTTGTCACCGCACCCGGTCTTGGTCAATACATCTCCGGCGCCATTCTCTTCGAAGAAACTCTCTACCAATCCACCGTTGACGGAGAGAAGATCGTAGACATCCTTCTTCAACAGAACATCGTTCCCGGTATCAAGGTCGATAAGGGTTTGGTTCCTCTGGCTGGTTCCAACGATGAGTCCTGGTGCCAAGGTCTGGATGGTCTTGCGTCTCGCTCAGCTGCTTACTACACTCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAACGGTCCCTCTGCTTTGGCAGTCAAGGAAGCTGCCTGGGGTCTGGCTCGCTATGCTGCCATTTCACAGGAGAACGGATTGGTCCCCATTGTAGAGCCAGAGATCTTGCTTGATGGTGAGCATGGCATTGACAGGACATTCGAAGTAGCGCAAAAGGTGTGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCTGTTTGAGGGTATTCTCCTTAAACCCAGCATGGTTACTCCAGGAGCCGAGTCTAAGGATAGGGCCACTCCTCAGCAAGTTTCTGACTACACCCTCAAGCTCCTTCACAGGAGAATCCCACCTGCTGTCCCTGGAATCATGTTTTTGTCTGGTGGACAGTCTGAGGTTGAAGCAACGTTGAACTTGAACGCGATGAACCAGTCTCCAAACCCATGGCACGTGTCGTTCTCCTATGCCAGAGCCCTCCAAAACACCACCTTGAAGACATGGGGAGGGCGGGCAGAGAACGTTAAAGCAGCACAAGACGCACTTCTTTTCCGTGCCAAATCCAACTCTCTCGCTCAACTTGGAAAGTACACAGGAGAGGGTGAATCTGATGAAGCCACAAAGGGGATGTTCGTCAAAGGCTACGTCTACTAA 1185 0.5249 MASASATLLKSSPVIDKCEWVKAQTLRHTPPLSVVRCNPAFTIRASYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTVDGEKIVDILLQQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYTQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQENGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAESKDRATPQQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTTLKTWGGRAENVKAAQDALLFRAKSNSLAQLGKYTGEGESDEATKGMFVKGYVY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03674 394 Gene3D Aldolase class I 32 393 IPR013785 -
Vimu10g03674 394 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 45 394 IPR000741 GO:0004332|GO:0006096
Vimu10g03674 394 NCBIfam fructose-bisphosphate aldolase class I 50 370 - -
Vimu10g03674 394 FunFam Fructose-bisphosphate aldolase 35 393 - -
Vimu10g03674 394 SUPERFAMILY Aldolase 42 394 - -
Vimu10g03674 394 CDD FBP_aldolase_I_a 48 374 - -
Vimu10g03674 394 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 255 265 IPR029768 -
Vimu10g03674 394 Pfam Fructose-bisphosphate aldolase class-I 50 394 IPR000741 GO:0004332|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03674 Vimu-Chr10 45825883 45827572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03674 40 394 Miscellaneous Gene Families AT3G52930 55.710 1.38e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03674 K01623 - gmx:100798677 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03674 10 45825883 45827572 Vimu10g03674 10 45825883 45827572 ECH
Vimu10g03674 10 45825883 45827572 Vimu5g02423 5 34897754 34900219 ECH