Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02312 ATGCTTCATGATACTCGATGTCCTTCATGGTGCATTCATTTTGTGCCAAAATTGTCAAAAATCATTCTCTTATTGAGTCATCAACTACAAGGTCAAAACAGCTGGCAGAGTCCAGCTGTTTTGGTCACCGTCACTACCAGAAACCCAGATATGGCTGTTCATACACCTGCAAGTTCATGTTTTGGAGCAAAGTATCAGGCTCTAGCACCATTGAGAATTTTAAGGGGTCTGGTGTGTCTACTGGTTCTGCTTTCAACAGCATTTATAATGCTAGTGTTCTTTGGCTTTATAAGTGCTGTTATAGTTCGACTTTTTAGTGTCCATTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCCTGGCTTGCCTTGTGGCCCTTTCTGTTTGAAAAGATCAACAAGACTAAAGTTGTGTTTTCTGGAGATGATGTTCCTTCCAGAGAACGGATCTTACTGATTGCAAATCATAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGAGGAAGGGATGCCTTGGATATATAAAATATATACTTAAGAGCAGCTTGATGAGACTTCCAGTTTTTGGTTGGTCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCAGATGAGTCAATCATGCGCCATATGCTTTCAACATTCAAGGATCCACAAGATCCTCTCTGGCTTGCTCTTTTCCCAGAAGGCACTGATTTTACTCAAAAGTATGCTGCTGAACATGGGTTACCAGTTCTGAAAAATGTTCTACTTCCAAAGACAAAGGGCTTCTGCGCCTGTTTGCAAGAACTGAGGGAATCTCTCACTGCAGTTTACGATGTTACCATTGGCTACAAAAACCGCTGCCCATCTTTCTTGGACAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATTCATATTCGTTGCATCCCCATCGATACTATCCCAGTATCTGAAAGTGAAATGTCCACTTGGTTGATAAATAGATTCCAGTTGAAGGATCAGTTGCTTTCCAATTTTCAAATCCAAGGTCAGTTTCCTGATCCAGCAACACAAAGGGACCTCTCTGGTGTGAAGAGCACATGCATGTACTACAGTTTTTCCTCTGTCTGGTTTAAACTTTATGTGTCTCTAGTATGTGCTTATTTGGTTCCAGCCACCTATTTCAATATTCGGCCACAGCCCATTCATACCCTTTTGAAGATGAGATCAAATTGCCACCTTTCAAATACATATGAATAG 1245 0.4137 MLHDTRCPSWCIHFVPKLSKIILLLSHQLQGQNSWQSPAVLVTVTTRNPDMAVHTPASSCFGAKYQALAPLRILRGLVCLLVLLSTAFIMLVFFGFISAVIVRLFSVHYSRRATSFFFGAWLALWPFLFEKINKTKVVFSGDDVPSRERILLIANHRTEVDWMYLWDLALRKGCLGYIKYILKSSLMRLPVFGWSFHILEFIPVERKWEADESIMRHMLSTFKDPQDPLWLALFPEGTDFTQKYAAEHGLPVLKNVLLPKTKGFCACLQELRESLTAVYDVTIGYKNRCPSFLDNVFGVDPSEVHIHIRCIPIDTIPVSESEMSTWLINRFQLKDQLLSNFQIQGQFPDPATQRDLSGVKSTCMYYSFSSVWFKLYVSLVCAYLVPATYFNIRPQPIHTLLKMRSNCHLSNTYE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02312 414 Pfam Acyltransferase C-terminus 297 353 IPR032098 -
Vimu5g02312 414 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 68 379 - -
Vimu5g02312 414 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 83 304 - -
Vimu5g02312 414 CDD LPLAT_LCLAT1-like 126 309 - -
Vimu5g02312 414 SMART plsc_2 150 257 IPR002123 GO:0016746
Vimu5g02312 414 Pfam Acyltransferase 139 286 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02312 Vimu-Chr5 34045251 34047378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02312 64 396 Miscellaneous Gene Families AT1G75020 59.207 2.39e-150 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02312 K13513 - gmx:100814885 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02312 5 34045251 34047378 Vimu5g02312 5 34045251 34047378 ECH
Vimu5g02312 5 34045251 34047378 Vimu11g00463 11 4962267 4965814 ECH