Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02268 ATGGTTTTTGTAGATTTTTGCTACATAGAAGAGAGTGAAGGTGAATCAAAGGACTATTGTGATGAAAGCAAGAGTGATGAGTATCCATGTGCGGTTGACAAGGAGTACTATGGTCGTGGGCCGATTCAATTGAAATGGAACTACAACTATGGAGCAGCAGGAGAGAACATTGGTTTTGAAGGGTTGAAGGCACCGGAGACAGTGGGGAGTGACCCAGTGGTGTCGTTCAAGACAGCACTGTGGTACTGGACAGAAAATGTGAGCCCTGTGATGGAGCAAGGATTTGGTGAAACCATTAGAGCTATGAAAGGTGAAGTTGAATGTGATGGAGGAAACCCTGATGCTGTTCAGGCTCGTGTTGATTACTACACACAATACTGTTCGCAGCTTGGTGTTGCTCCTGGTGATAACCTCACTTGCTAA 423 0.4539 MVFVDFCYIEESEGESKDYCDESKSDEYPCAVDKEYYGRGPIQLKWNYNYGAAGENIGFEGLKAPETVGSDPVVSFKTALWYWTENVSPVMEQGFGETIRAMKGEVECDGGNPDAVQARVDYYTQYCSQLGVAPGDNLTC 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02268 140 PANTHER CHITINASE-RELATED 6 140 - -
Vimu5g02268 140 SUPERFAMILY Lysozyme-like 5 140 IPR023346 -
Vimu5g02268 140 Gene3D Endochitinase, domain 2 10 70 - -
Vimu5g02268 140 Pfam Chitinase class I 5 88 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu5g02268 140 Pfam Chitinase class I 92 140 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu5g02268 140 Gene3D - 6 140 - -
Vimu5g02268 140 FunFam Endochitinase (Chitinase) 10 70 - -
Vimu5g02268 140 CDD chitinase_GH19 6 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02268 Vimu-Chr5 33801958 33802380 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02268 6 140 Glycoside Hydrolase AT3G54420 69.630 4.38e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02268 K01183 - gmx:100778526 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02268 5 33801958 33802380 Vimu5g02268 5 33801958 33802380 ECH
Vimu4g00377 4 2677831 2678744 Vimu5g02268 5 33801958 33802380 PCT