Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00377 ATGGGAAACAGATTGCTTTTCGTTCTTGTAGCAGTGGCTCTTGTTACGGTGTCAAAAAATGTAAGTGCTCAGAACTGCGGGTGTGCCGAAGGGTTATGCTGCAGCCAGTATGGATACTGTGGTACTGGTACAGAATACTGTGGCACAGGGTGTCAGCAGGGTCCTTGTACCACATCAAGTCCCCCAAGCAACAATGTTAATGTTGCTGACATTGTCACAGCCGAATTTTTCAACGGCATAATCGATCAAGCTGATTCTGGTTGTGTTGGCAAGAACTTTTACACACGAGATGCTTTCCTCCGTGCTCTCGATTCCTACACTGACTTTGGCAGAGTTGGTTCCGAGGACGACTCCAAACGCGAGATTGCAGCTGCTTTTGCTCATTTCACACATGAAACTGGACATTTTTGTTACATCGAAGAGATTGATGGTGCAAGCAAGGACTACTGCGACGAGGAATCGATTGCACAGTATCCATGTTCTTCCAGCAGAGGGTACCACGGTCGTGGTCCGATCCAATTGTCGTGGAACTTCAACTACGGACCAGCAGGGGAGGCCAACAACTTCGATGGATTGGGCGCTCCGGAAACAGTGTCGAACGATGTTGTGGTGTCTTTCAAGACAGCATTGTGGTACTGGATGCAACATGTGCGGCCTGTCATAAACCAGGGTTTCGGTGCAACCATCAGAGCCATCAATGGTCAACTTGAGTGTGATGGTGCTAACCCCTCTACTGTTCAGGCTCGCGTTAATTACTACACAGAATACTGCAGACAATTGGGTGTGGACACTGGTGATAATCTTACTTGCTAA 813 0.4809 MGNRLLFVLVAVALVTVSKNVSAQNCGCAEGLCCSQYGYCGTGTEYCGTGCQQGPCTTSSPPSNNVNVADIVTAEFFNGIIDQADSGCVGKNFYTRDAFLRALDSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSRGYHGRGPIQLSWNFNYGPAGEANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPSTVQARVNYYTEYCRQLGVDTGDNLTC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00377 270 ProSitePatterns Chitinases family 19 signature 2. 204 214 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu4g00377 270 SMART ChitinBD_3 25 56 IPR001002 GO:0008061
Vimu4g00377 270 SUPERFAMILY Lysozyme-like 67 270 IPR023346 -
Vimu4g00377 270 ProSiteProfiles Chitin-binding type-1 domain profile. 23 58 IPR001002 GO:0008061
Vimu4g00377 270 PIRSF Endochitinase 2 270 IPR016283 GO:0004568|GO:0005975
Vimu4g00377 270 Gene3D - 69 270 - -
Vimu4g00377 270 Pfam Chitin recognition protein 23 56 IPR001002 GO:0008061
Vimu4g00377 270 SUPERFAMILY Plant lectins/antimicrobial peptides 21 62 IPR036861 GO:0008061
Vimu4g00377 270 ProSitePatterns Chitinases family 19 signature 1. 88 110 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu4g00377 270 Gene3D Endochitinase, domain 2 142 200 - -
Vimu4g00377 270 Gene3D - 20 68 IPR036861 GO:0008061
Vimu4g00377 270 Pfam Chitinase class I 71 216 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu4g00377 270 Pfam Chitinase class I 223 270 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu4g00377 270 FunFam Endochitinase PR4 59 148 - -
Vimu4g00377 270 CDD chitinase_GH19 72 270 - -
Vimu4g00377 270 PRINTS Chitin-binding domain signature 34 41 IPR001002 GO:0008061
Vimu4g00377 270 PRINTS Chitin-binding domain signature 26 34 IPR001002 GO:0008061
Vimu4g00377 270 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Vimu4g00377 270 PANTHER CHITINASE-RELATED 6 270 - -
Vimu4g00377 270 FunFam Class IV chitinase 20 69 - -
Vimu4g00377 270 FunFam Endochitinase (Chitinase) 140 200 - -
Vimu4g00377 270 CDD ChtBD1 28 52 - -
Vimu4g00377 270 ProSitePatterns Chitin recognition or binding domain signature. 28 47 IPR018371 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00377 Vimu-Chr4 2677831 2678744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00377 1 270 Glycoside Hydrolase AT3G54420 69.630 2.67e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00377 K01183 - gmx:100776582 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00377 4 2677831 2678744 Vimu4g00377 4 2677831 2678744 ECH
Vimu4g00377 4 2677831 2678744 Vimu5g02268 5 33801958 33802380 PCT