Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02254 ATGAGTGAAACTAAGGAAAGGAGTGGGTTTTGCGTGTGGCCGGATGCGAGACAACTTTGCTTGCGGAAAGGTCTTTTATATGGATTTATGCGATTATTTTCTATACCTTTAAAAACATTGCGTGGAGCTAGTCGGTCGTTGAGAGTAGATCAATTTTGCAGTGTAGTGAATCTATCTTCCACGCTGCAGATTGAATTGGTTCCGTGCCTTAGGGACAGTTATGCATATCTTTTACATGATGTGGATACGGGGACAGTTGGTGTTGTTGATCCTTCCGAAGCTGCGCCTATTATAGATGCTTTGAGTAAGAAAAATCTAAATTTGACTTACATACTGAACACCCATCACCATCATGATATCACTAGTGGAAATACAGAGTTGAAAGAAAGGTACGGGGCTAAGGTAATTGGCTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATTTATTTGAGTGATGGAGATAACTGGATGTTTGCAGGTCATGAGGTGCATATATTAGCTACACCTGGTCACACTGAAGGTCATGTAAGCTTCTACTTTCCAGGATCGGCAGCAATTTTTACTGGAGACACCTTGTTCAGCTTATCATGTGGAGAGATCTTTGAAGGAACCCCTGAACAGATGCTATCTTCTCTTAAAAGAATAATGTCGTTGCCGGATGAAACAAGTATTTACTGCGGCCATGAATATACATTGAGTAATTCAAAGTTTGCCTTGTCCGTAGAACCAGAAAACAAGGAACTTCAATCCTATGCTGCCCATGTAGCTCACATTAGAAATAAGGGCTTGCCCACGATTCCAACTACGCTTAAGATGGAAAAGGCGTGCAATCCATTCCTTCGCACATGGAGCATGGAAATCCGGCAAAAGCTAAATATTGCAGCCACCGCAGATGATGCAGAAGCCCTGGGTGTTATTCGGCAAGCAAAGGATAAATTTTAG 948 0.4177 MSETKERSGFCVWPDARQLCLRKGLLYGFMRLFSIPLKTLRGASRSLRVDQFCSVVNLSSTLQIELVPCLRDSYAYLLHDVDTGTVGVVDPSEAAPIIDALSKKNLNLTYILNTHHHHDITSGNTELKERYGAKVIGSEIDKERIPGIDIYLSDGDNWMFAGHEVHILATPGHTEGHVSFYFPGSAAIFTGDTLFSLSCGEIFEGTPEQMLSSLKRIMSLPDETSIYCGHEYTLSNSKFALSVEPENKELQSYAAHVAHIRNKGLPTIPTTLKMEKACNPFLRTWSMEIRQKLNIAATADDAEALGVIRQAKDKF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02254 315 Pfam Metallo-beta-lactamase superfamily 73 230 IPR001279 -
Vimu5g02254 315 Hamap Hydroxyacylglutathione hydrolase [gloB]. 62 315 IPR017782 GO:0004416|GO:0019243
Vimu5g02254 315 NCBIfam hydroxyacylglutathione hydrolase 65 315 IPR017782 GO:0004416|GO:0019243
Vimu5g02254 315 SMART Lactamase_B_5a 72 230 IPR001279 -
Vimu5g02254 315 FunFam Hydroxyacylglutathione hydrolase, mitochondrial 62 315 - -
Vimu5g02254 315 SUPERFAMILY Metallo-hydrolase/oxidoreductase 62 314 IPR036866 -
Vimu5g02254 315 Gene3D - 62 315 IPR036866 -
Vimu5g02254 315 CDD hydroxyacylglutathione_hydrolase_MBL-fold 67 230 IPR035680 -
Vimu5g02254 315 PIRSF Glx 57 315 IPR017782 GO:0004416|GO:0019243
Vimu5g02254 315 PANTHER BETA LACTAMASE DOMAIN 56 315 - -
Vimu5g02254 315 Pfam Hydroxyacylglutathione hydrolase C-terminus 231 315 IPR032282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02254 Vimu-Chr5 33703577 33706657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02254 K01069 - gmx:100805615 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00389 4 2779547 2781662 Vimu5g02254 5 33703577 33706657 PCT