Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00389 ATGAATGATAATAAGGTGAGAAGTGGGTTGTGCGTGTGGCCAAATGTGAGACAAATTTGCTTTAGAAAAGGCATTCTGTATGGATTTATGCGATTGTTTTCTACACCATTGAAAACGCTGCGTGGAGCAAGTCGCACGCTGAGGGTGGCTCGATTTTGCAGTGTTGTGAATATGTCTTCCTCTTTGCAGATTGAATTGGTACCTTGCCTGAAGGACAATTATGCTTATCTTTTATATGATGTGGATACTGGTACGGTTGGTGTTGTTGATCCTTCTGAAGCTGTGCCTGTCATAGATGTCTTGAGCAGGAAAAATCGAAATTTGACTTACATACTCAACACTCACCATCATCATGATCACACTGGTGGAAATGTAGAATTAAAGGCGAAATATGGGGCAAAGCTACTACTTAGTACAGATGATAACACTTCCCATGCTGCAATACAGGTGATTGGTTCAGGAACTGACAAGGAAAGGATTCCTGGCATTGATATCTATTTGAATGATGGTGATAGGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATAGACACACCTGGTCACACCCGAGGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGATACGTTGTTCAGCTTGTCATGTGGCAAGCTGTTTGAAGGAAGCCCTCAGGAGATGATGTCTTCTCTTAAAAAGATCATGTCCCTGCCAGATGATACAAATATATACTGTGGACACGAGTATACATTGATGAATACAAAGTTTGCATTGTCTATAGAACCTGAAAACAAAGAACTTCAATCCTATGCTGCTCATGTAGCTTACCTTCGGAGTAAAGGCTTGCCTACGATTCCCACCACACTGAAGATGGAAAAGGCTTGTAATCCATTTCTTCGTACATCCAGTGCTGCAATTAGGCAATCATTGAACATTGCAACCACAGCAAATGATGCAGAAGCCCTTGCTGTCATACGGCAAACAAAGGATAATTTTTAG 993 0.4179 MNDNKVRSGLCVWPNVRQICFRKGILYGFMRLFSTPLKTLRGASRTLRVARFCSVVNMSSSLQIELVPCLKDNYAYLLYDVDTGTVGVVDPSEAVPVIDVLSRKNRNLTYILNTHHHHDHTGGNVELKAKYGAKLLLSTDDNTSHAAIQVIGSGTDKERIPGIDIYLNDGDRWMFAGHEVRVIDTPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKLFEGSPQEMMSSLKKIMSLPDDTNIYCGHEYTLMNTKFALSIEPENKELQSYAAHVAYLRSKGLPTIPTTLKMEKACNPFLRTSSAAIRQSLNIATTANDAEALAVIRQTKDNF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00389 330 FunFam Hydroxyacylglutathione hydrolase, mitochondrial 62 330 - -
Vimu4g00389 330 Hamap Hydroxyacylglutathione hydrolase [gloB]. 62 330 IPR017782 GO:0004416|GO:0019243
Vimu4g00389 330 Pfam Metallo-beta-lactamase superfamily 75 245 IPR001279 -
Vimu4g00389 330 SUPERFAMILY Metallo-hydrolase/oxidoreductase 62 330 IPR036866 -
Vimu4g00389 330 Gene3D - 62 330 IPR036866 -
Vimu4g00389 330 SMART Lactamase_B_5a 72 245 IPR001279 -
Vimu4g00389 330 CDD hydroxyacylglutathione_hydrolase_MBL-fold 67 245 IPR035680 -
Vimu4g00389 330 PANTHER BETA LACTAMASE DOMAIN 56 330 - -
Vimu4g00389 330 NCBIfam hydroxyacylglutathione hydrolase 65 330 IPR017782 GO:0004416|GO:0019243
Vimu4g00389 330 PIRSF Glx 57 330 IPR017782 GO:0004416|GO:0019243
Vimu4g00389 330 Pfam Hydroxyacylglutathione hydrolase C-terminus 246 330 IPR032282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00389 Vimu-Chr4 2779547 2781662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00389 K01069 - gmx:100819370 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00389 4 2779547 2781662 Vimu4g00389 4 2779547 2781662 ECH
Vimu4g00389 4 2779547 2781662 Vimu5g02254 5 33703577 33706657 PCT