Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02243 ATGGAGGCGATGGACATGAGGCGCGTGTTCGAGATGTTCGATCGGAACGGGGATGGGCGAATATCGGCGAAGGAGCTGAGAGATTCGTTGGTGAATTTGGGGATAGAGATTCCGGAGAAGGAGCTGGCGGAGATGATCGAGAGGATCGACGTCAACGGCGACGGCTGCGTGGATATGGCGGAGTTCGGGGAGCTGTACGAGACGATAATGGAGGAGCGCGACGATGAGGAGGACATGCGGGAGGCCTTCAATGTGTTCGACCAGAACCGCGATGGCTTCATCACCGTCGACGAGCTCCGCGCCGTGCTGGCCTCCCTGGGTCTTCAACAAGGGAGAAGCTTGGAGGAGTGCCGGAAGATGATCGTGAAAGTGGACGTTGACGGAGATGGCATGGTGAATTACAAGGAATTCAGGCAAATGATGAAGGGTGGTGGAGGATTCACTGCTATTGGTTAA 456 0.5592 MEAMDMRRVFEMFDRNGDGRISAKELRDSLVNLGIEIPEKELAEMIERIDVNGDGCVDMAEFGELYETIMEERDDEEDMREAFNVFDQNRDGFITVDELRAVLASLGLQQGRSLEECRKMIVKVDVDGDGMVNYKEFRQMMKGGGGFTAIG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02243 151 Gene3D - 3 67 - -
Vimu5g02243 151 SUPERFAMILY EF-hand 5 142 IPR011992 -
Vimu5g02243 151 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Vimu5g02243 151 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Vimu5g02243 151 CDD EFh 78 142 IPR002048 GO:0005509
Vimu5g02243 151 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Vimu5g02243 151 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Vimu5g02243 151 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Vimu5g02243 151 SMART efh_1 116 144 IPR002048 GO:0005509
Vimu5g02243 151 SMART efh_1 41 69 IPR002048 GO:0005509
Vimu5g02243 151 SMART efh_1 5 33 IPR002048 GO:0005509
Vimu5g02243 151 SMART efh_1 78 106 IPR002048 GO:0005509
Vimu5g02243 151 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Vimu5g02243 151 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Vimu5g02243 151 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Vimu5g02243 151 Gene3D - 68 144 - -
Vimu5g02243 151 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Vimu5g02243 151 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 142 - -
Vimu5g02243 151 PRINTS Parvalbumin signature 124 137 - -
Vimu5g02243 151 PRINTS Parvalbumin signature 87 103 - -
Vimu5g02243 151 PRINTS Parvalbumin signature 65 83 - -
Vimu5g02243 151 FunFam Calmodulin 1 2 143 - -
Vimu5g02243 151 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02243 Vimu-Chr5 33644912 33645367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02243 1 145 EF-hand Containing Proteins AT1G05990 71.918 5.65e-71 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02243 K13448 - gmx:100796922 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00402 4 2874462 2875121 Vimu5g02243 5 33644912 33645367 PCT