Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00402 ATGCCAACTATTGTGCTAAGGTTTTTTCTTCTTTACAACCTCCTTCATCCATTTCTTCTGTGTCTGGTTCCTAAGAAGGTGCGAGCCATTCTCTCTCCTTCTTGGTTCCGATCCTCCACAACCACCACACCACCAACATCAACACAACCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGCCATCACCAGAATTTCACTCTCAATGGATCCCAACGAGCTGAAGCGCGTGTTTCAGATGTTCGATCGTAATGGAGACGGGAGAATCACGAAGAAGGAGCTGAGCGACTCCTTGGACAATCTGGGCATTTTCATTCCCGACAAGGAGCTGACCGTGATGATCGAGAGAATAGACGTTAACGGAGACGGGTGTGTGGACATCGACGAGTTCGGGGAGCTCTACCAGACGATCATGGACGAGCGTGACGAGGAGGACGACATGCGAGAGGCCTTCAACGTGTTTGATCAGAACGGCGATGGCTTCATCACCGTGGAAGAGTTGAGGACCGTTTTGTCCTCGCTCGGGTTGAAACAGGGAAGAACGGTGGAGGATTGCAAGAAGATGATCATGAAGGTGGACGTCGATGGAGATGGGATGGTCGACTACAAAGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTTAGTGCTCTCACTTGA 660 0.4955 MPTIVLRFFLLYNLLHPFLLCLVPKKVRAILSPSWFRSSTTTTPPTSTQPSSSSSSSSSSSAITRISLSMDPNELKRVFQMFDRNGDGRITKKELSDSLDNLGIFIPDKELTVMIERIDVNGDGCVDIDEFGELYQTIMDERDEEDDMREAFNVFDQNGDGFITVEELRTVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00402 219 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Vimu4g00402 219 PRINTS Parvalbumin signature 156 172 - -
Vimu4g00402 219 PRINTS Parvalbumin signature 134 152 - -
Vimu4g00402 219 PRINTS Parvalbumin signature 193 206 - -
Vimu4g00402 219 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 146 211 - -
Vimu4g00402 219 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Vimu4g00402 219 MobiDBLite consensus disorder prediction 37 60 - -
Vimu4g00402 219 SMART efh_1 110 138 IPR002048 GO:0005509
Vimu4g00402 219 SMART efh_1 147 175 IPR002048 GO:0005509
Vimu4g00402 219 SMART efh_1 74 102 IPR002048 GO:0005509
Vimu4g00402 219 SMART efh_1 185 213 IPR002048 GO:0005509
Vimu4g00402 219 FunFam Calmodulin-like protein 5 51 144 - -
Vimu4g00402 219 SUPERFAMILY EF-hand 73 213 IPR011992 -
Vimu4g00402 219 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Vimu4g00402 219 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Vimu4g00402 219 Pfam EF-hand domain pair 74 136 IPR002048 GO:0005509
Vimu4g00402 219 Pfam EF-hand domain pair 146 211 IPR002048 GO:0005509
Vimu4g00402 219 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Vimu4g00402 219 CDD EFh 147 211 IPR002048 GO:0005509
Vimu4g00402 219 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Vimu4g00402 219 Gene3D - 52 137 - -
Vimu4g00402 219 FunFam calmodulin-like protein 3 145 214 - -
Vimu4g00402 219 ProSiteProfiles EF-hand calcium-binding domain profile. 181 216 IPR002048 GO:0005509
Vimu4g00402 219 Gene3D - 138 213 - -
Vimu4g00402 219 ProSitePatterns EF-hand calcium-binding domain. 119 131 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00402 Vimu-Chr4 2874462 2875121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00402 5 217 EF-hand Containing Proteins AT2G43290 63.303 1.08e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00402 K13448 - gmx:100527487 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00402 4 2874462 2875121 Vimu4g00402 4 2874462 2875121 ECH
Vimu4g00402 4 2874462 2875121 Vimu5g02243 5 33644912 33645367 PCT