Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02231 ATGTCTATAGTACAAAAACTCTCAAATCTATCAATGGTCGTTTCAGTTTCTTCTCTTTTGGGCGTCATCATGTCTAAGAAAACTCAAACCTTTTGCAATCCCAACTCATCCACTTCCTCTCTTGAAGCTTCCCACTCCAAAGTTCGCGTCTTTGTCAGGAAAAATAAAAAACCCGGAAGCATGGCTGTCAAACTTGAAGAAGATGACCATTTTCCATCAACCCAGGATCACAAGGTTCCGGCTACACAGAAGTTTGGCCTTCCAGAAATTGAAGAATTTGCGTACTGTGGAGCAACTAAATTGACTCGGCGTGTAAACTCTGAAATGGAATCAGAGGGTGCTTCAGTGACAAGTGAAGTTGGCTCAACTAGACCTGGTGGTAAATCACCTGCCCACTGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGGTGATGCACCAGTGGATACTATGGGATGTGAGAAAGCTGGTGATACACTACCTCCTAAGGAGAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCTAGCCAAACAAAGGATCATGTTACTCATGGAGCAATTCAACGCCTTCTTCAAAATGATCTGCTTACAGCTGAAGCTATCAATAATGTTGATGAAGAGACTGTCAAGAAGTTGATCTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTACAATGGAGACATACCAAGCTCAATTGACCAACTACTGTTACTTCCAGGCATTGGTCCTAAGATGGCACATTTGGTTATGAATTCTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGGCTTGGGTGGGTCTCAAGATTGGGCACAAAACAGAAAACTTCAACACCTGAAGAGACAAGAGAGTCTTTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTCTCTTGGTAGGGTTTGGACAAACAATCTGTACACCTCTGAGACCTCGTTGTGGAGAATGCAGTGTAAGAGACTTGTGTCCCTCTGCCTTCAAGGAGACCTCAAATTCAAGCCCATCTTCCAAGCCCAAAAAGCCCAGGCTGAACAAGAAGCCTTAA 1134 0.433 MSIVQKLSNLSMVVSVSSLLGVIMSKKTQTFCNPNSSTSSLEASHSKVRVFVRKNKKPGSMAVKLEEDDHFPSTQDHKVPATQKFGLPEIEEFAYCGATKLTRRVNSEMESEGASVTSEVGSTRPGGKSPAHWEKVLEGIRKMRCSGDAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDHVTHGAIQRLLQNDLLTAEAINNVDEETVKKLIYPVGFYTRKATNLKKIANICLMKYNGDIPSSIDQLLLLPGIGPKMAHLVMNSGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETRESLQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSVRDLCPSAFKETSNSSPSSKPKKPRLNKKP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02231 377 ProSitePatterns Endonuclease III family signature. 243 272 IPR004036 -
Vimu5g02231 377 Gene3D - 267 358 IPR023170 -
Vimu5g02231 377 Pfam HhH-GPD superfamily base excision DNA repair protein 174 315 IPR003265 GO:0006284
Vimu5g02231 377 SMART endo3end 178 334 IPR003265 GO:0006284
Vimu5g02231 377 Pfam Helix-hairpin-helix motif 240 267 IPR000445 GO:0003677
Vimu5g02231 377 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 60 368 - -
Vimu5g02231 377 MobiDBLite consensus disorder prediction 107 131 - -
Vimu5g02231 377 SUPERFAMILY DNA-glycosylase 148 368 IPR011257 GO:0003824|GO:0006281
Vimu5g02231 377 Hamap Endonuclease III-like protein 1 [NTHL1]. 129 358 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Vimu5g02231 377 FunFam Endonuclease III-like protein 1 165 269 - -
Vimu5g02231 377 SMART ccc3 335 355 IPR003651 GO:0051539
Vimu5g02231 377 CDD ENDO3c 170 332 IPR003265 GO:0006284
Vimu5g02231 377 MobiDBLite consensus disorder prediction 108 124 - -
Vimu5g02231 377 MobiDBLite consensus disorder prediction 355 377 - -
Vimu5g02231 377 Gene3D Hypothetical protein; domain 2 163 266 - -
Vimu5g02231 377 FunFam Endonuclease III homolog 268 358 - -
Vimu5g02231 377 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 336 352 IPR004035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02231 Vimu-Chr5 33553153 33558845 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02231 K10773 - gmx:100818398 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00407 4 2902451 2905519 Vimu5g02231 5 33553153 33558845 PCT